CI01000006_05821114_05830402 (ZBTB16, ZBTB16A)


Basic Information

Item Value
gene id CI01000006_05821114_05830402
gene name ZBTB16, ZBTB16A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 5820438 ~ 5830561 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_05821114_05830402.mRNA
TTATAAATAGACACAGGATTGGAGGTAAATTATGCCAAAATTCAGGCAGCAGGAAGCAGCAGCCAAAGCCAGTCCTCTATCCAGGTGTCACTTTGTCCAACTCAATTTTGCACTGTAATAGAGGCGAGTGGGTCAGCCACTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGTTTTTTTTTCTCTGCCTTACCCTTCAGTACCTCACAGAAGAGTTTCTCCCAGCTAGGCCATTTACTTGTGATGCTCTTTACTTCACACCGAGGAACACTTAATTCCAGCTAACACCAATCACATGGACACTGCACTTCCCTTCATGGCTGCCGCTTTATCAACTCTCCCCCCTGCCCTTCTTCTGTTCCCAAAATAGTGTTCTTTCTTTAGTGAAAGTGTTCTTACAACTTGAGAAATATGATGTATTAAGGGGTGAACTGTAAGATGTGTTATTTGACTGGTAATGGAAACATAATTCACCTTTGGGATTGTTTTAATCAAATTATATCATTAAAAAATATTATTCAAGTATCGTAAGTGTTGAAGTTACATTACTATTCAAATGTTTAGGGTCAGTGAGGCCCACAGTACATGGTCACTGATTGAGCTTTTCTGAGAGGGAAATACTTGAAATGAAAAGTGGGTGAATTATCATCATTAAATCTTTCAGTCACCGATAATGTGGGATTTTAAGAGCAATCACGGAGCAGCACTGGTGATGTGGCTTAGTCTTTCCCTCCGCCCCATCCAGACCCTTGAGCTCCCTGGGATCAGATATGGCCATCTTCTGTTTGCTGTGCGGGAAGCGATTCCAGACGCAGACGGCTCTGCAGCAGCACATGGAGGTCCACGCAGGCGTGCGCAGCTACATCTGCAGCGAGTGCAACCGCACATTTCCCAGCCACACCGCACTCAAGCGCCATCTCCGTTCGCATACAGAGTTGCTTTACTTGGCGGCAGCAGGGATGAATATTTGAAGCGAAAGCAGGAGATGAGCAAAGCCCGCCTGTTTACAGGCCGCCCAGCCGTTATTGGGCAGCTGACGGCATACCTCGGCCTAAATGCTGATGCGGAACCAATTTTAACAGGATTTCAGAGAATGATTGCACACGTTTCCGCTGATTTTAGAGAGGAATTTCTGTTCTTGAACGTACTTGCTCATCTTTTTTTCTCTCCCATTACTGCCGAAGCAAAGACTGTGGAGCCCGAGCAGCCGTGTAAATGTGAGGCGTTTAGCTGCGTCTCGCTACAAAACGTGCCTGAGGAAATTGACATTGTCTGGTGCAGAAACTACACCTTCACGTGTCACCTCTGTCCAGCAGGTGACCACCCGTTTGAATGCGAGTTCTGCGGCAGCTGCTTCCGAGACGAGAGCACGCTGAAGGGACATAAGCGCATCCACACCGGAGAGAAGCCCTATGAATGTAACGGCTGCGGCAAGAAGTTCAGCCTCAAACACCAGCTAGAGACCCACTACCGTGTCCATACAGCCCATACCAAAGGGCAGGCCATTTCCAGTGCTGTCAGCTCGCTCTTTGACAAGGGGATTAGTGTGGTACTGGAGAGACCAGGTGAGAAGCCGTTTGAGTGCAAGCTCTGCCACCAGCGCTCCAGGGACTACTCTGCCATGATCAAACACCTGCGCACCCACAACGGAGCCTCTCCGTACCAGTGCACCATCTGCCTGGAATACTGCCCCAGCCTCTCCGCCATGCAGAAGCACATGAAGGGCCACAAGCCCGAAGACATCCCCCCGGACTGGAGGATAGAGAAGACATACCTGTACCTCTGCTACGTCTGAAAAGGGGGGGAAATAGCGGGGAGGGAGGGACGTGGGAGGGCGAGGGGCTAAAGCACCTGGAAACACAGTCAGGAAATGGACGGATTGGTCAGATGAGCTGTGCAAGGCAGAGTGGGAACGGGAACTAGAAAGACAGAAATCTTACCCATCAGTATCGCA

Function

symbol description
zbtb16a Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within positive regulation of type I interferon production and regulation of neurogenesis. Located in nucleus. Is expressed in several structures, including anterior neural keel; anterior neural rod; central nervous system; pleuroperitoneal region; and posterior neural rod. Human ortholog(s) of this gene implicated in acute promyelocytic leukemia. Orthologous to human ZBTB16 (zinc finger and BTB domain containing 16).
zbtb16 Enables several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; protein homodimerization activity; and transcription corepressor binding activity. Involved in several processes, including positive regulation of cell differentiation; positive regulation of ossification; and regulation of transcription, DNA-templated. Acts upstream of or within negative regulation of transcription, DNA-templated. Located in PML body and nuclear speck. Part of transcription repressor complex. Implicated in acute promyelocytic leukemia.

NR:

description
Zbtb16 protein

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10055 ZBTB16, PLZF; zinc finger and BTB domain-containing protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_05821114_05830402.mRNA True 1957 mRNA 0.49 8 5820438 5830561

Neighbor

gene id symbol gene type direction distance location
CI01000006_05739275_05746584 NA coding upstream 73252 5738808 ~ 5747186 (+)
CI01000006_05729706_05734532 NA coding upstream 85770 5729268 ~ 5734668 (+)
CI01000006_05719079_05723838 NA coding upstream 96273 5719079 ~ 5724165 (+)
CI01000006_05617900_05693346 NCAM1, NCAM1A coding upstream 127092 5617900 ~ 5693346 (+)
CI01000006_05469329_05478118 NA coding upstream 341809 5469017 ~ 5478629 (+)
CI01000006_05870762_05888691 USP28 coding downstream 40201 5870762 ~ 5889135 (+)
CI01000006_05893735_05901666 ZW10 coding downstream 62970 5893531 ~ 5902022 (+)
CI01000006_05903309_05926132 DLAT coding downstream 72748 5903309 ~ 5926132 (+)
CI01000006_05933352_05969576 NA coding downstream 102613 5933174 ~ 5970118 (+)
CI01000006_05977013_05979433 GUCA1D coding downstream 145920 5976481 ~ 5979890 (+)
G43887 NA non-coding upstream 16277 5792917 ~ 5804161 (+)
G43898 NA non-coding upstream 29524 5789421 ~ 5790914 (+)
G43903 NA non-coding upstream 46489 5771881 ~ 5773949 (+)
G43942 NA non-coding upstream 377515 5442465 ~ 5442923 (+)
G43934 NA non-coding upstream 392120 5428100 ~ 5428318 (+)
G43970 NA non-coding downstream 241836 6072397 ~ 6072706 (+)
G43988 NA non-coding downstream 279605 6110166 ~ 6110406 (+)
G43990 NA non-coding downstream 289797 6120358 ~ 6120735 (+)
G43908 NA non-coding downstream 321312 6151873 ~ 6154727 (+)
G43904 NA non-coding downstream 363608 6194169 ~ 6199969 (+)
G43896 NA other upstream 48663 5770089 ~ 5771775 (+)
G41996 NA other upstream 696289 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 2084460 3734554 ~ 3736035 (+)
G41591 NA other upstream 2981017 2836167 ~ 2839421 (+)
G41424 NA other upstream 3159868 2645662 ~ 2660570 (+)
CI01000006_06104927_06109730 NA other downstream 277923 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 291474 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 1336228 7166778 ~ 7168925 (+)
G44872 NA other downstream 1525791 7356352 ~ 7387884 (+)
G45178 NA other downstream 1791430 7607604 ~ 7683671 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location