CI01000006_05617900_05693346 (NCAM1, NCAM1A)


Basic Information

Item Value
gene id CI01000006_05617900_05693346
gene name NCAM1, NCAM1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 5617900 ~ 5693346 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_05617900_05693346.mRNA
GTATCTGGGTTATTTCTGAAATATGTTTTTCTCTCTGTCTCCCCAGCTGCTTTGCAAGTGGATATCACTCCGGCCCAGGGAGAGATCAGCGTGGGAGAGTCCAAATTCTTTTTGTGTGAAGTTGTTGGAGATGCTAAGGAAATAGACTGGTTTGCACCCAATGGGGAAAAGCTCAGTCCAGGGAGACCAGACATCAGCGTCAGCAAGAATGACGAATCCTCGTCGACACTTACAATCTACAATGCTAACATCGACCATGCAGGCATGTACAAGTGTGTGGCCAAAAGCGGGGACAAGGAATCTCAGGGCACTGTCATCGTAAAAATTTTCCAGAAACTCACTTTCCAAAATGCTCCATCGCCTCAAGAGTTCAATGAGGAGGATAATGCTGACATCATCTGTGACGTCATCAGCTCACCACCCCCAACTATCATCTGGAAGTATAAAAAGATAAGAATCCAGCCTGAGACTGATGTCCGTTTCGAGGTCTTAAGCAACAACCACCTCCAGATCCGTGGCATCAAAAAGTCAGATGAGGGTGACTACACCTGCGAGGGCCGCATCATGGCCCGGGGAGAAATCGACCTCAGGGTCATTAAGGTCATTGTCAATGTTAAGCCAAGTATCAGGACCCGCTACACTGAGCTTAATGCCACTGCAGACATCAACCAGGCTGTGACGTTGGCCTGTTACGCAGATGGCTACCCAGAACCCACCGTCACGTGGGCACGAACTAATATTGTGCTGGAATCCAATGGGAAGTACAGTCTGAATGAAGATGGGTCGGAGTTGACCATCAAAAACGTCAATAAGCTTGATGAAGGAGATTACCAGTGCATCGCTAGAAACAAGGCTGGAGAGAATAGAAAGGAAGTCGCACTCAGTGTGTTTGTGCAACCCAAGATCACGTTCCTAGAAAACCAGACGGCTTCTGAATTGGAGGAGCAGATCACACTAACTTGCGAGGCCACAGGTGACCCCACCCCCAACATCATCTGGAGCTTCGGTCGCCGTGTCTTCACCGAGAATGAGCAGAGTCTGGATGGCAACGTGATTGTGCGCAGTGATGCTCGTGTGTCCTCTCTGACTCTAAAGTACGTGCAGTTCACCGATGCCGGCCAGTACCTCTGCACTGCCCGCAACTCCATTGGTCAGGACATCCAGAGCATGTACCTGGAAGTGCGCTATTCTCCAAAGATCCAGGGCCCTGCGGCGGTGGTCACCTGGGAGGGTAATCCGGCTAATATCACCTGCGAGGCCCTCGCTCACCCGGCCGCTTCCGTTTTGTGGTTCCGTGATGGCCAGATGCTGCCTAGCGCTAATACCACAAACATCAAGATCTACAACACTCCCGCAGTCAGCTTCCTGGAGGTCACTCCAGAGTCCCAGAACGACTTTGGCAGTTACAACTGTACGGCTACTAATGTCATCGGCACAGAGTCAAAGGAATTCGTTTTGGTTCAAGCAGATGTGCCTTCGGCCCCCTCTATCGAGCGCGTGGAGCCTTATTCCAGCACAGCAATGGTGGAGTTTGATGAGCCTGCCTCCAGTGGAGGAGTGCCTATCCTTAAGTACAAGGCTGAATGGAGGATAGCAGGCCAAGACTGGACTGACAGAGAGTATGAGGCTGAGGATGGTCTCAACTTGATCACTATTGTTGGGCTGAAGCCAGAGACCACATATGAGGTCAAGATATCAGCCATCAACGGCAAGGGTGAAGGAGAGAGCAGCGCCCCGGAAAGCTTCAAAACCCAACCTGTCCGGGAACCTAATCCTCCTAAACTGGAGGCTAAGCCACTGTCCACAGGCAACGAGATGAAGGTCCACTGGATCAAGCAGGATGATGGGGGCTCTCCCATCAAACACTATTTAGTGCGCTACAAAGCTAAACATCGCCAGGATTGGAAGCCAGAGATCCGCCTGCCCAATGGTAGCGAGTACGTTGTGCTGCAGGGTCTGGAGTGGAACACGGAGTATGAGGTCTCCGTTATAGCCGAAAACCAGAGAGGACGATCTAATCCCGGCAAACTCTTCTTCAGGACCTTGCCAGAACCCACCGCCATCCCAGAAACCAGCTCAGGGTTGGGCACCGGGGCTATTGTGGGCATCCTCATCGTGGTCTTCATCCTGCTCCTCTTCGGTGTGGATGTCACATGCTACTTCCTCAACAAGTGCGGCCTCCTCATGTGCATCGCTGTCAACTTCTGCGGCAAGTCTGGGCCCTCTGCCAAGGGCAAGGATATCGAGGAGGGAAAAGCCGCTTTCACTAAGGATGAGTCTAAGGAGCCCATTGTGGAGGTAAGAACTGAGGAAGAGCGCACACCAAACCATGAGGGAGGAGGCCCCACTGAACCCAATGAGACCACCCCTCTGACGGACCCCGAG

Function

symbol description
ncam1a Acts upstream of or within posterior commissure morphogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including anterior neural keel; myotome; nervous system; optic vesicle; and pectoral fin. Human ortholog(s) of this gene implicated in bipolar disorder; middle cerebral artery infarction; and pancreatic cancer. Orthologous to human NCAM1 (neural cell adhesion molecule 1).
ncam1 Predicted to enable virus receptor activity. Predicted to be involved in commissural neuron axon guidance; modulation of chemical synaptic transmission; and regulation of semaphorin-plexin signaling pathway. Predicted to act upstream of or within several processes, including homotypic cell-cell adhesion; positive regulation of calcium-mediated signaling; and regulation of exocyst assembly. Located in cytosol and external side of plasma membrane. Implicated in bipolar disorder; middle cerebral artery infarction; and pancreatic cancer. Biomarker of several diseases, including acute promyelocytic leukemia; brain glioblastoma multiforme; cholangiocarcinoma; insulinoma; and ovarian serous carcinoma.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06491 NCAM, CD56; neural cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_05617900_05693346.mRNA True 2385 mRNA 0.52 16 5617900 5693346

Neighbor

gene id symbol gene type direction distance location
CI01000006_05469329_05478118 NA coding upstream 139271 5469017 ~ 5478629 (+)
CI01000006_05380873_05439031 NA coding upstream 178383 5380319 ~ 5439517 (+)
CI01000006_05276965_05313266 NA coding upstream 303670 5276756 ~ 5314230 (+)
CI01000006_05196006_05199842 NA coding upstream 417321 5195332 ~ 5200579 (+)
CI01000006_05169144_05174432 NA coding upstream 442597 5168117 ~ 5175303 (+)
CI01000006_05719079_05723838 NA coding downstream 25733 5719079 ~ 5724165 (+)
CI01000006_05729706_05734532 NA coding downstream 35922 5729268 ~ 5734668 (+)
CI01000006_05739275_05746584 NA coding downstream 45462 5738808 ~ 5747186 (+)
CI01000006_05821114_05830402 ZBTB16, ZBTB16A coding downstream 127092 5820438 ~ 5830561 (+)
CI01000006_05870762_05888691 USP28 coding downstream 177416 5870762 ~ 5889135 (+)
G43942 NA non-coding upstream 174977 5442465 ~ 5442923 (+)
G43934 NA non-coding upstream 189582 5428100 ~ 5428318 (+)
G43933 NA non-coding upstream 189816 5427850 ~ 5428084 (+)
G42224 NA non-coding upstream 219759 5397778 ~ 5398141 (+)
G42223 NA non-coding upstream 220195 5397430 ~ 5397705 (+)
G43903 NA non-coding downstream 78535 5771881 ~ 5773949 (+)
G43898 NA non-coding downstream 96075 5789421 ~ 5790914 (+)
G43887 NA non-coding downstream 99571 5792917 ~ 5804161 (+)
G43970 NA non-coding downstream 379051 6072397 ~ 6072706 (+)
G43988 NA non-coding downstream 416820 6110166 ~ 6110406 (+)
G41996 NA other upstream 493751 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 1881922 3734554 ~ 3736035 (+)
G41591 NA other upstream 2778479 2836167 ~ 2839421 (+)
G41424 NA other upstream 2957330 2645662 ~ 2660570 (+)
G41170 NA other upstream 3922079 1692065 ~ 1695821 (+)
G43896 NA other downstream 76743 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 415138 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 428689 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 1473443 7166778 ~ 7168925 (+)
G44872 NA other downstream 1663006 7356352 ~ 7387884 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location