CI01000006_05903309_05926132 (DLAT)


Basic Information

Item Value
gene id CI01000006_05903309_05926132
gene name DLAT
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 5903309 ~ 5926132 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_05903309_05926132.mRNA
ATGTTGCGTTTAGCGCTGCGAGTGCGCCCATCTGCCAGGCTTACCCGGCCCAGTGTCCTCTCAGGCCCTGCTGCTTCTGCCGCCAGTCCTCGATCTGGACCGGTATCATGCCATCATCTCAAACGATACCACTCCAACGGCCCGACCCGGATCCGGAGCTTGTGTCATGGTCGGCGTGTGTACAACAGCATCCTCAGTAACAGATCATGGGTCTTGCAAACCCAAACAGCTAGTTTCAGTCAAAGCATGCGAGTCTACAGTCTGCCGCCCCATCAGAAGGTGGAACTGCCTGCTTTGTCCCCCACTATGCAGATGGGCACTATTGCACGCTGGGAAAAGAAAGAAGGTGACAAAATTAATGAGGGAGATCTGATTGCTGAGGTTGAAACAGACAAGGCTACAGTTGGATTTGAACTGCTGGAGGAGTGCTACCTAGCCAAGATCTTGGTTTCTGAGGGTACAAGAGATGTGCCCATTGGAGCTGTCATTTGTATTACCGTCGACAATCCTGACCTCATCCCTGCATTTAAGGACTATACATTGGATAAAATCGCTAGCTCCGCCCCTGCTCCTGCAGCTCCCCCTCCAGCAGCACCCACTGCTGCTCCTGCAGCGCCACAAGTTCCTGGAAGCTCCTACCCACCTCACATGAAGGTTCAGCTCCCAGCTCTCTCCCCCACCATGACTATGGGCACAGTGCAACGCTGGGAGAAAAAGGTGGGTGAGAAGCTGAGTGAGGGAGACCTGCTGGCTGAAATCGAGACTGATAAGGCAACAATCGGTTTTGAGGTACAGGAGGAGGGCTATCTGGCCAAGATAATGGTTGCTGAGGGCACCAGAGACGTTCCTCTCGGCACTCCTCTCTGCATCATTGTGGAAAAGGAATCTGACATTAGCGCGTTTGCAGACTATGTAGAGACTGGTGTGGCTGCAAGCCCACCTCCTGCTCCCACACCGGTGGCCGCCCCACCACCAGCACCAGCTCCCTCCCCAGCACCTGCCGCTGTTTCAGCCACCCCTGCTGCTCCTAGGAAGGGTAGGGTGTTTGCCAGCCCTCTAGCCAAGAAACTGGCTGCCGAGAAGGGAATTGACATTGCCCAAGTCACAGGAACCTTCACAGACATCCCCATCAGCAATATCCGCAGAGTGATCGCCCAGAGGTTGATGCAGTCAAAACAGACTATTCCTCACTATTACTTGTCTATTGATGTTAACATGGACCAAGTTCTTGAACTCAGGAAAGAGCTCAATGCTGAGGTGAAAGCTGATAACATCAAACTCTCGGTCAATGACTTCATCATCAAGGCCTCGGCTCTAGCCTGTTTAAAGGTCCCAGAGGCCAACTCCTCCTGGATGGACACGGTTATTAGGCAAAATCACGTGGTGGATCTTAGCGTCGCAGTCAGTACACCTGTGGGTCTAATCACTCCCATTGTATTTAATGCTCATATTAAGGGACTTGCGACTATCAGCAAAGACGTAGGCACATTAGCTGCTAAAGCACGAGAGGGTAAACTACAACCGCATGAATTCCAGGGTGGCACCTTCACTATTTCGAATCTGGGCATGTATGGCATCAAGAATTTTTCAGCTATCATTAACCCTCCTCAAGCCTGCATTCTGGCTGTGGGTGGCTCAGAAAAGAGACTTCTGCCTGCAGACAATGAAAAAGGGTTTGACGTGGCTAGCATGATGTCTGTGACTCTGAGCTGTGATCACCGGGTGGTAGATGGTGCTGTCGGCGCACAGTGGCTGGCTGAGTTCCGCAAGTTCCTGGAAAAACCTTATAACATGCTCCTTGAACGCGCTCTTCATCACGAGACCATCGACATGCCGCCGAAGAAGCGCAGTAGCGGGACTCCGCAAAAGAAAGAGTTCAAGGGGACCATGAAGAGCGAGTCTCCGGACAGTAGCGAGAACGCAGTGCTGAGCCCCGAACGACACAAGGACAAGGAATCTGAGTTTGTGTCTCTCAGTGAGGAGCTGCAGGCCACAAATCCCATCTGTGATCATGCGTGGAAAATTTGGGAGAGGGAGATCAGGCCGATGGACAAGGCAAATATGCCGTATTCGAACAGACAGCAGTGGGGAGCTTGTCTGTTTATTGCAGGCTTGGAGCTTGAAGGCATCAGCCTCACCTTTACACAATTCCTAAAAGTGGTTGGACTGAGTGTGAAGCAGTTAATCAGCCTTGTGAGGAAGATGGATGTAAATGTGGACACAATAAGCCCCAAAGTGAACACTGCTGTGACACGATTGGAGAAGAAATATGATGTGACCTTGACCCTCTACCAAAGATTTGTGAAGACTTGTGAAAAAATATTTGCAGAGCCTGACATAGCAAAGAGAAAAGAGCTTTGGGAAAGCAGTTGGACCATGTTCCTCTTGGCCAAGGGAACATTTCTGCATATGGAGGATGACCTTGTGATAGCTTTTCAATTGCTGCTGTGTGTTCTGGAGTTCTTCACCAAGCGTTTCACTCCTTCTCTCCTTCAGTCACCCTACAAGTCAGCGGTTAGTTCATCCACCTTGAGTCCTCCAACCAGGACATCCCGACGTAATCAGGGCAAAACCAAACCCCGTCCTCCAGAGATGGACATGCAGTTGCTGGAGACACTGTGCAAGGAGGGCGATTGCAGTGTGGATGAGGTGAAAAACGTGTACCAGACCACTTTCTGTGCATTTCTGGACTCTGTGGGTCTGTCGGGACTCCAAGGGCTTCCTCCAATGGAAACACTTTCCAAGCAATATGAAGAGCTGTACCACAAAAACAAGGACTTTGATGCCAGGTTGTTCTTGGTTGATGATGAAACGCTTTCCCCCAACAAAATTGAAGTGGCTGCAATGAATTCCATACAGCAGCTCAGGGTTGATCTCACCTCAGCTAGTGACCAGCCCTCAAGCAATCTCCTAGTCTATTACAAGAACTGCACTGTTGACCCATCAGAAGAGATCAGAAAGAGGGTTGAGGAGCTGGGTCAGGTCTTCATCCAGAGGTTTGCACAGGCTGTGGGCCAGCATTGCGAGGGGCTGGGCAGAAAGCGGTTTAATCTTGGTGCCCAGCTCTACTACAAAGTCATGGAGTCCATGCTTAAATCGGAGGAGAAGAGATTATCAGTGCAGAATTTCAGTAAACTTCTCAACAATGCAGCATTCCATACCTCATTGCTTGCATGCGCTCTGGAAGTTGTTATGGCAACTTATGTTGGGAACTCCTTAAAGAATGGAGGTATTGGCCGCAGCTCAGGGGCCAGCGATTCCATTGAAACTGATCTGTGCTTCCCCTGGATCTTGGACGTCTTCCAGCTGCCTGCTTTTGACTTCTACAAGGTGATAGAGAGCTTCATCAAAGCCGAACCCACCCTGAAGCACGACATGATGAAGCACCTGGAGCAGTGCGAACATGTTATCATGGAGAGCCTTGCATGGAGAGCGGTGAGTAACTGTCTGCTGCCATTTATGTCGATTGTTTCGTTCAGTCAGTCACTGAAGCAACTATTTAGCAAGCATTCAGCCTATTCTAGCAACTAG

Function

symbol description
dlat Contributes to pyruvate dehydrogenase activity. Acts upstream of or within acetyl-CoA biosynthetic process from pyruvate and detection of light stimulus involved in visual perception. Predicted to be part of mitochondrial pyruvate dehydrogenase complex. Is expressed in several structures, including adaxial cell; ectoderm; head; immature eye; and pronephric duct. Used to study lactic acidosis and pyruvate decarboxylase deficiency. Human ortholog(s) of this gene implicated in pyruvate decarboxylase deficiency. Orthologous to human DLAT (dihydrolipoamide S-acetyltransferase).

GO:

id name namespace
GO:0045254 pyruvate dehydrogenase complex cellular_component

KEGG:

id description
K00627 DLAT, aceF, pdhC; pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_05903309_05926132.mRNA True 3531 mRNA 0.50 29 5903309 5926132

Neighbor

gene id symbol gene type direction distance location
CI01000006_05893735_05901666 ZW10 coding upstream 1287 5893531 ~ 5902022 (+)
CI01000006_05870762_05888691 USP28 coding upstream 14174 5870762 ~ 5889135 (+)
CI01000006_05821114_05830402 ZBTB16, ZBTB16A coding upstream 72748 5820438 ~ 5830561 (+)
CI01000006_05739275_05746584 NA coding upstream 156123 5738808 ~ 5747186 (+)
CI01000006_05729706_05734532 NA coding upstream 168641 5729268 ~ 5734668 (+)
CI01000006_05933352_05969576 NA coding downstream 7042 5933174 ~ 5970118 (+)
CI01000006_05977013_05979433 GUCA1D coding downstream 50349 5976481 ~ 5979890 (+)
CI01000006_05987812_05989546 NA coding downstream 61628 5987760 ~ 5990537 (+)
CI01000006_06006532_06022059 POLQ coding downstream 78670 6004802 ~ 6022182 (+)
CI01000006_06038315_06045317 ANGPTL5 coding downstream 112183 6038315 ~ 6045684 (+)
G43887 NA non-coding upstream 99148 5792917 ~ 5804161 (+)
G43898 NA non-coding upstream 112395 5789421 ~ 5790914 (+)
G43903 NA non-coding upstream 129360 5771881 ~ 5773949 (+)
G43942 NA non-coding upstream 460386 5442465 ~ 5442923 (+)
G43934 NA non-coding upstream 474991 5428100 ~ 5428318 (+)
G43970 NA non-coding downstream 146265 6072397 ~ 6072706 (+)
G43988 NA non-coding downstream 184034 6110166 ~ 6110406 (+)
G43990 NA non-coding downstream 194226 6120358 ~ 6120735 (+)
G43908 NA non-coding downstream 225741 6151873 ~ 6154727 (+)
G43904 NA non-coding downstream 268037 6194169 ~ 6199969 (+)
G43896 NA other upstream 131534 5770089 ~ 5771775 (+)
G41996 NA other upstream 779160 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 2167331 3734554 ~ 3736035 (+)
G41591 NA other upstream 3063888 2836167 ~ 2839421 (+)
G41424 NA other upstream 3242739 2645662 ~ 2660570 (+)
CI01000006_06104927_06109730 NA other downstream 182352 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 195903 6122035 ~ 6122751 (+)
CI01000006_07167131_07168925 NA other downstream 1240657 7166778 ~ 7168925 (+)
G44872 NA other downstream 1430220 7356352 ~ 7387884 (+)
G45178 NA other downstream 1695859 7607604 ~ 7683671 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019593 dlat coding NC_007132.7 CM002905.2 23019372 ~ 23035120 (-)