CI01000006_06136379_06136891


Basic Information

Item Value
gene id CI01000006_06136379_06136891
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 6135816 ~ 6137257 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_06136379_06136891.mRNA
CAATATATTGGGCTTGGAGAATCATGGTACAGCTCTCTTTGCTTTTGGAGAAAACAAATAAACATGCTTTTACAAAATGGTCAAATGCAGATTTGCCAAATCTTACAGAATCTATAGCTCTATCTTTTACGAAGTCCACATATACATGTAATCATTCATAAAAGAGTTTAAGATAAAGAGAAACTGAAAGCTTATTCTTTTGCGCGCAAAATATTTCCATTGTGGAAACCCCCTTCATAAACCTACTTTCAGAAGGTCTGCACGCAGTGTTAGAAGAAGCATCAGAGGTAAGTTACTTTGCTTGTGTTAAAATACACTACCGTTCAAAAGTTTGGGGTCAGTCATTTTTTCCCTTTCTTTTTTTTTTAAATAAATAATACTTTTATTCAGCAAGGATGTGTTAAATTGATAAAAAGTGATAGTAAGGATTTATATTGTTAGAAAAGATTTCTATGTTGAATAAATGCTGTTCTTTTTAACATTTTTCATCAGTGAATCTTGAAAAAAGTATCACAGGTTCCAAAAAACTATTAGGCAGCACAGCTGTTTCCAATATTGATACAATGCATACAATTATTTGTGGTTCAGGTGCAAACATGTGGGAAGAAGATGACTTGGGTCCATCTGCTCCACCATGTCTTGAGAGCTATACAGCTCCAGAGGAAGGCAAAGTCTACAAAATGTATCATGGCACATCTATGGAGAATGAGCAACAAATTGTTATGTATGGTTTCCTTCAGTCTTCTAATGGGATGCTTGGGCCTGGTGTCTACCTCAGCCGAGATCTACAGAAGGCCTCCAGATACCCTCTGGATTTACCTGAGAGCCAGAGAGTGGTTCTGAGAGTGAGGGTCGATGTTGGGAAAGTGATAAAGATTAACTATAAACGTCATCCACTGCAGGAAACCTGGCATGATTATGGGTATGACACTGCTTGGTGCCCTCCAAACTGTGGTATGGTGCGAAGTGGTCTTGAAGAATTCTGTGTTTGGGATCCAAGACGAATCACAGTCATTGATGTAATTCATCCAATTCAAGAGGAAATTGTAGAGCAAAATGCTTGTAGAATCCTCTGAAGATGTTGATTAAACCAAAAGCCTATAATTATTTGATATAAAAAATTTTATTGTTACAGATTTGTAGTCTATTTTGTCTGAGTACACCTGAATACAAAGTGTGCTGTGAAATGAACAAAAATGATCAAAACATTCGGGATCAAAACACAAACCTACAATACCTACAAAAACAGCATGAAAGACAAATTTGTGTATACAGTAAAGCTTTCTTGATTACCAGGAAAAGTTTAAGGATAACTTGGTATAAACCGGCATAAACGAGAGAGAGATACTGGAACAGGCAGTCTGAACATTTGTTGTTATATACATAGCAGCTGCATAAACACTTTTATTCTACCACTGTATTCTTGTATTTTAAATGAAGAA

Function

NR:

description
interferon-inducible protein Gig2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_06136379_06136891.mRNA True 1442 mRNA 0.36 1 6135816 6137257

Neighbor

gene id symbol gene type direction distance location
CI01000006_06122278_06122736 NA coding upstream 13065 6122035 ~ 6122751 (+)
CI01000006_06111210_06113067 NA coding upstream 22693 6111107 ~ 6113123 (+)
CI01000006_06104927_06109730 NA coding upstream 25996 6104927 ~ 6109820 (+)
CI01000006_06100199_06103495 FBXO40.1 coding upstream 32293 6100199 ~ 6103523 (+)
CI01000006_06095035_06097240 FBXO40.2 coding upstream 38576 6095035 ~ 6097240 (+)
CI01000006_06142449_06142925 GIG2I coding downstream 5042 6142299 ~ 6143068 (+)
CI01000006_06146799_06148260 NA coding downstream 9472 6146729 ~ 6148405 (+)
CI01000006_06171151_06179449 PVRL1A coding downstream 33894 6171151 ~ 6181375 (+)
CI01000006_06192438_06193928 NA coding downstream 55181 6192438 ~ 6194004 (+)
CI01000006_06201072_06204390 CFAP53 coding downstream 63815 6201072 ~ 6204695 (+)
G43990 NA non-coding upstream 15081 6120358 ~ 6120735 (+)
G43988 NA non-coding upstream 25410 6110166 ~ 6110406 (+)
G43970 NA non-coding upstream 63110 6072397 ~ 6072706 (+)
G43887 NA non-coding upstream 331655 5792917 ~ 5804161 (+)
G43898 NA non-coding upstream 344902 5789421 ~ 5790914 (+)
G43908 NA non-coding downstream 14616 6151873 ~ 6154727 (+)
G43904 NA non-coding downstream 56912 6194169 ~ 6199969 (+)
G44009 NA non-coding downstream 135681 6272938 ~ 6273227 (+)
G44010 NA non-coding downstream 137748 6275005 ~ 6275234 (+)
G44012 NA non-coding downstream 148391 6285648 ~ 6285875 (+)
G43896 NA other upstream 364041 5770089 ~ 5771775 (+)
G41996 NA other upstream 1011667 5117206 ~ 5124149 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other upstream 2399838 3734554 ~ 3736035 (+)
CI01000006_07167131_07168925 NA other downstream 1029532 7166778 ~ 7168925 (+)
G44872 NA other downstream 1219095 7356352 ~ 7387884 (+)
G45178 NA other downstream 1484734 7607604 ~ 7683671 (+)
G45265 NA other downstream 1746610 7883867 ~ 7920355 (+)
G45336 NA other downstream 1882085 8019342 ~ 8021951 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019571 gig2l coding NC_007132.7 CM002905.2 22642698 ~ 22648007 (-)