CI01000006_03441003_03442001


Basic Information

Item Value
gene id CI01000006_03441003_03442001
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3440656 ~ 3442955 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_03441003_03442001.mRNA
CTATAAATGTATAAACCCCAATAGAATTTTTAGGAACCAAATGTGAAACTGAGTGAATTATCCTTTGAACATCATAACTTTTTTTTTTGAACTCATTTCTTGACCTATGATTTAAGTGTGCGAGACCATTAGTTATTAAATGCCGATAGAAAAATGCTTCATGGCTGCAGGGAAGTTGTGGTTTCTCCTGTTTCGCATTTGTAATTCTTGCTTCAACTAAAGTAGATGTTTTTTGCCTGTTTATTTGACTTTGTTTTTCTTCTTAGGAACTTCATTGTTTGAGACCTTGCACGTGCAAATCAACCAAAGACTGATCCCAAAACACTTTGCTGTTCTTCCCGTCCAAAATGGTGAAGATATTTGTTGGCAATGTAGCTTCAGCGACCACCGAAGACGAGCTCCGTGCTTTGTTCGAGAAGTATGGCGCTGTGTCTGACTGTGATATTCTGAAAAACTATGGCTTCGTGCACATGGATGAGGAAGAGGCAGCTCAAAAGGCCGTCTCAGCTTTGCACAAGCACGAGGTCAATGGTTCCCGTATCACCGTTGAGTATGCCACCACCAAGGTACGCAATGCCACCAAGATCTACGTGGGCAATGTTCCCGAAGGAGTCACCGCCGCCAAAATCAAGGAGCTCTTCCAGCCGTTCGGCAAGGTGGTGGAGTGCGACATCGTGAAGAATTACGCATTCGTTCACATGCAGAGGGAAAGCGAGGCTCTGGAGGCTATTTCAGAGCTTAACCACTCCAAATTGGAGGGCCAAAAGATCTTTGTGTCCCTCTCACGCAGTAACCCATCCAGAAACGGCCGAGGGGATGACTATTATCCTCCTCCTCCCCCACATCACTATCCACCTCACCCACACCATCATCCTCACTTTCTCCCCCCACGCCCGCCGCCCCGTGACTACTATCCGCCCCGTGGCCGACTTCCACCCCCTCCTCTCCCACCGCCGCCGCCCCGCGCCTACTACGAGCGCGAAGTGTATGAGAGGGGCCTTCGCCACGACCCGTACGCTGCCCCATCCCCACGTTTTTACGAGCGGGATCCATATGAGCGGCGCCTTCCGCCCCCTCAGCGACCAGTCACGCCGCCTCTCGCCGGGCGCTACTACCGTGAGCGCAGCCCTCTCGGCGGTCGCCGCTCTCTCCTGCCTCCGCCTCCCCCTCCACCCTCTTCTGCCGGCTTCGCCCGCGGTTTCGCCCGCAATGGCGCTAGCTCAGCACCCCCTCCCCCTGCCGCCGCTCCTTCCTCCCACTATCAGCGCTACTCTCTCGGCTCAGGCTTTGATAAGGATGATTATATGGAGGACAAGTACAGCAATGGCTTCAGCCGTAGCTACTAAGCATTGAAGTTTGTCCGTCCCTTTTTTATTATCGAGGAGCCAAATAATCTAAAAGGGACGTAACTTCAGGGAGTTAGGGGTGATGATTTTTTTTTTTTTTTTTTTTTTGTAATATTCTGTGATAGTTGTAGCTATTTTAGATAACGGGTCAATCAGCTAATACTGTACTCATTTAACTAATAGATTTACCTCCGCCCGATGAAGGAACGGCAAATAGGAAGTTAAATACACCTGAGTTTTATAGCATGTTATGATGTACTATATTTGCCAGCCATATCGGTTTGAGTATTTTCTTAAAATAACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTACAATCAAATCTTACATTTTTAGTTCATTTTACTCTGGCATGCACTAAATACAAAAGAATCGCTTGGGGGAAAAAATATATATAAATATATTTTTTTGCATTGATATTTCAACTTGCATAGCCTACCCAACAGGAAATTGGTCGTGTTGAATGTTTACCTGTTTTTTTTTTTTTTTTCTCCTTGGTATTTAGAAATATTCAAGTTTTGTCACTATATTTTGCATGAGTGAGACAAGTTAATTTGGAGATATTTTGAATTTTCCTCATTGGTCTTCGTAACTAAATTATATTAATACTGTATTTTTTGTTTTGTTTTTGATTTTATTTTATTTTTTTAATTAAATTTCTTCTCTGGACTACCTTTATGTAGGCAAATTAACTTGCTATGTTGTTGTTAGATGTTGGATGTAAGTGAGACCAGTGGGAAGGAACAGAGAGGAAAATGGGTAAAGAGGTGGTTGTGGGCGGAGCTGTATGCTAACTGACTGATCAACCAATCCCATCCTACCGGCTAACCGAGTACATCGCATCCACCAGCCGCTCAACTTTCGGATCCGCTGCCGCATCCTAGGACCATCGGTCAAAGGAAACGAACGACCGACCAGCCGCCGACCGCCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_03441003_03442001.mRNA True 2300 mRNA 0.45 1 3440656 3442955

Neighbor

gene id symbol gene type direction distance location
CI01000006_03412397_03437333 MARK2A coding upstream 2946 3412397 ~ 3437710 (+)
CI01000006_03350988_03356496 NA coding upstream 83499 3350764 ~ 3357157 (+)
CI01000006_03327370_03334117 RIN1A coding upstream 105954 3327370 ~ 3334702 (+)
CI01000006_03319103_03319306 NA coding upstream 121136 3319103 ~ 3319520 (+)
CI01000006_03294091_03298089 SLC29A2 coding upstream 141985 3293988 ~ 3298671 (+)
CI01000006_03446979_03447865 NA coding downstream 4024 3446979 ~ 3447916 (+)
CI01000006_03483581_03526564 SLC8A4A coding downstream 40626 3483581 ~ 3527202 (+)
CI01000006_03548703_03554763 PPP1R14BA, PPP1R14B coding downstream 105748 3548703 ~ 3554763 (+)
CI01000006_03607868_03614573 LRFN4A coding downstream 164300 3607255 ~ 3614935 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L coding downstream 291599 3734554 ~ 3736035 (+)
G41542 NA non-coding upstream 75089 3362995 ~ 3365567 (+)
G41526 NA non-coding upstream 81394 3357535 ~ 3359262 (+)
G41506 NA non-coding upstream 96376 3339239 ~ 3344280 (+)
G41520 NA non-coding upstream 124865 3300085 ~ 3315791 (+)
G41513 NA non-coding upstream 151920 3283664 ~ 3288736 (+)
G41566 NA non-coding downstream 6495 3449450 ~ 3455035 (+)
G41519 NA non-coding downstream 88810 3531765 ~ 3533019 (+)
G41632 NA non-coding downstream 105003 3547958 ~ 3548175 (+)
G41634 NA non-coding downstream 116483 3559438 ~ 3559662 (+)
G41635 NA non-coding downstream 116813 3559768 ~ 3560079 (+)
G41591 NA other upstream 601235 2836167 ~ 2839421 (+)
G41424 NA other upstream 780086 2645662 ~ 2660570 (+)
G41170 NA other upstream 1744835 1692065 ~ 1695821 (+)
G40768 NA other upstream 2947630 488407 ~ 493026 (+)
G40767 NA other upstream 2957321 360009 ~ 484185 (+)
G41996 NA other downstream 1674251 5117206 ~ 5124149 (+)
G43896 NA other downstream 2327134 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 2665529 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 2679080 6122035 ~ 6122751 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019651 zgc:77262 coding NC_007132.7 CM002905.2 27197711 ~ 27201495 (-)