XLOC_019651 (zgc:77262)


Basic Information

Item Value
gene id XLOC_019651
gene name zgc:77262
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 27197711 ~ 27201495 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038683
AGACAAGCCGTCGACCCCGCCGTCATCGTATATTGACAGAAAGCGCACCCATGTCTGCGCTATAGCAGCAATTTTGAGGAAGAAGCTTGTTTGAGACCTTACATGTGCAAATCAACCAAAGACTGATTCCAAAACACACCGCTGTTCTTCTCATTCAAAATGGTGAAGATATTTGTTGGCAATGTAGCTTCAGCGACCACAGAAGATGAGCTCCGTGCTTTATTCGAGAAGTACGGCGCAGTGTCTGACTGTGACATTCTGAAAAATTATGGCTTTGTGCACATGGATGAAGAAGAGGCTGCGCAGAAGGCCGTCTCCGCTTTGCACAAGCACGAGGTCAACGGCTCCCGCATCACTGTTGAGTATGCCACCACCAAGGTACGCAATGCCACCAAGATCTACGTGGGCAATGTCCCCGAAGGCGTTGCCGCTGCCAAAATTAAGGAGCTCTTCCAGCCATTCGGCAAGGTGGTGGAATGCGATATCGTGAAGAATTATGCATTCGTTCACATGCAGAGGGAAAACGAGGCTCTGGATGCCATCGCAAAGCTTAACCACTCCAAAGTGGATGGCCAAAAGATCTTTGTGTCCCTCTCGCGCAGTAATCCATCCAGAAACGGCCGAGGGGAGGACTattatcctcctcctccacctcacTATCCACCCCACCCGCACGACCATCCTCACTTTCTCCCCCCTCGCCCGCCACCCCGTGACTACTATCCGCCTCGTGGCCGAATTCCACCGCCTCCTCCTCTCCCACCGCCACCGCCCCGCTCCTACTATGAGCGTGATCCGTACGAGAGGAGCCTCCGCCATGACCCATACGCCCCTCCATCCCCTCGTTTTTACGATCGGGATCCTTATGACCGGCGCCTTCCGCCTCCTCAACGGCCGGTCTCACCTCCTGTCGCCAGTCGCTATTACCGTGAACGCAGCCCTCTCGGTGGTCGCCGCTCTCTCCTGCCTCCGCCTCCCCCTCCACCACCTCCTGCGGGCTTTGCCCGCAGTTTCGCCCGCAATGGTGCTAGCTCAGCCCCCCCTCCTCCTAGTGCCCCTTCCTCCCACTATCAGCGCTACTCCGTTGGCTCAGGCTTTGATAAGGATGATTATATGGAGGACAAGTACAGCAATGGCTTCGGCCGTAGCTACTAAGCATTGAAGTCTGTCCGTCACTTTTTATTGTGGAGAGCTGAGTAAACTAAGAGGGGCGTACCTTCAGGGAGTTAGGGgtgaatattttttgtaatattctgTGATAGTTGTAGCTATTTTAGATAACGGGTCAATCAGCTAATACTGTAATAATAGATTTGCCTCCACCCAATGAAGAAACAGCAAATAGGAAGTTGAATGCATCTGTGTTTCGGAGTTTTATAGCATGTTATGATGTCCTATATTTGCCAGTCTTAtcgtttttttgtttagtttaagcaaatgacattttcattcattttactctGGCATGTACTTCTAAAAAACTAAAGATTgcttgaaaatatatataaatacacatattttttgCATTACATAGAATAGCATAGTCTGTTCTACAGGATATTGGTCGTACTGAATGTTAACCTGTTTATTTCTGTTTGGTTTTTGGAGTATTTAAGTGTTGTCAGAGTCTTTTGCGTTAGTTTatgggtctcaaactggattcctggagggccgcagctatgcacagttttgctccaatcctaatcaaacacagctgatccaactaatcaaggtgtttgaGACTCTTTTGAAcaacttgattagttggatcagctttttgattagggttggagcaaaactgtgcagagctgcggccctccaggaatccagtttgagacccatgcATTAGTCAATTCATTTTCGAATAATtcgaatttttaaaaatttgtcccAGTAACCAAAttctatcaattttttttttcatttatttctataattttcttttttatgaagCTGTTCTCTGGATTACCTAGATGTAGGCAAATTATCTTACTATTGTGTTGTTAGAAGTAATGTTGAGGATGTGAGACCAGTGGGAAGGAACAGAGAGGAAATGGGTAAAGAGGTGGTTGTGGGCGGAGTTGTATGCTAACTGACTGATCAACCAATCACATCCTACCGGCTAACCAATCACACCACATCCACCAGCCGTTCAACGTTCGGATCCGCAGCCGCATCCTAGGAAAAGCTCCACCGGTCAAAGGAAGCGAACGACAACCTGCCgcctaataaaattaaaaccggCGTTGAATCTGTAGTGCAATTCTTACATTGTATTTCTAGATCTCGTTGTATTCGACAAATAGTTGATTTGCCGACTCCGCAGAAAGTTTTTAAAGACTTCACATTAACAATGGACGTGCTTGTTATTGAAAAATTACTGAACACTCAACAGTTGTTTCCTGTTCTACTTGTACTACTGCTGTTTACCTATTGTTTGCGTACACTTCTGTTTAAACTGTAcgtttgttaaaaaaagaaagaagcctGTTTTCTCGACTGTTCACTCGAAACCGCTCTCATTCTCATACTGTCCTCTCGAGCAGGTTCgttgtttgttttgattaaaaaacTATGAAAACAGATTCATGTTCTACCAGTCGCTGTCATCTTGCCGCCTGAATAAAATTTCGACTGATTTAGA

Function

symbol description
zgc:77262 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck.

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0005634 nucleus cellular_component
GO:0016607 nuclear speck cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1811 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck.

Ensembl:

ensembl_id ENSDARG00000044545

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038683 True 2644 mRNA 0.46 2 27197711 27201495

Neighbor

gene id symbol gene type direction distance location
XLOC_019650 zgc:110782 coding downstream 2388 27192763 ~ 27195323 (-)
XLOC_019649 NA coding downstream 6277 27188124 ~ 27191434 (-)
XLOC_019648 slc8a4a coding downstream 11796 27047333 ~ 27185915 (-)
XLOC_019647 ppp1r14ba coding downstream 186874 26996276 ~ 27010837 (-)
XLOC_019646 lrfn4a coding downstream 278808 26908627 ~ 26918903 (-)
XLOC_019652 mark2a coding upstream 2887 27204382 ~ 27273147 (-)
XLOC_019653 hif1al2 coding upstream 125947 27327442 ~ 27338639 (-)
XLOC_019654 rin1a coding upstream 155273 27356768 ~ 27362938 (-)
XLOC_019655 slc29a2 coding upstream 205986 27407481 ~ 27413294 (-)
XLOC_019656 bfb coding upstream 236372 27437867 ~ 27443995 (-)
XLOC_019645 NA non-coding downstream 372405 26820922 ~ 26825306 (-)
XLOC_019643 BX465841.1 non-coding downstream 495757 26701821 ~ 26701954 (-)
XLOC_019640 NA non-coding downstream 594070 26600961 ~ 26603641 (-)
XLOC_019633 NA non-coding downstream 802403 26251376 ~ 26395308 (-)
XLOC_019658 CR405687.1 non-coding upstream 356995 27558490 ~ 27566738 (-)
XLOC_019661 AL845282.1 non-coding upstream 744779 27946274 ~ 27946391 (-)
XLOC_019662 BX927322.1 non-coding upstream 861711 28063206 ~ 28063322 (-)
XLOC_019663 NA non-coding upstream 1161979 28363474 ~ 28363814 (-)
XLOC_019664 NA non-coding upstream 1201475 28402970 ~ 28411915 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_03441003_03442001 NA coding CI01000006 null 3440656 ~ 3442955 (+)