XLOC_019653 (hif1al2)


Basic Information

Item Value
gene id XLOC_019653
gene name hif1al2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 27327442 ~ 27338639 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00038692
TCTGTGAGTATGTTAATTTATCCTAACATGAGCGAATGCCACCTGCTAACATGCCTTACACAAGATCACTTTGAGTCATCTATACTTTTGAAATGACTTCAATGAATTTGGAAACAGGAGGAGAAGACTGCCACGGAAAAGCTAGAAGAAAGCAAACATTCATCGAGCAGAAGAAAAGGAGAGTCTGCACAGAATGGAGAAAAACATGTTCCCGTTTGGCAGCACAGAGCAGGAGGAAGAAGGAGAGTCAACTGTTCAAAGAGTTAACTGCTCTTCTGCCTCTGGACTTGAGTATGGACGGTCAGCGAGACAAAGCTTCGGTAATACGTCTCACAATTGCTTACCTGCACCTGAGGGGTCTTTTGGACACCACAGACTCCTTGATGAAACGTCCTTCACCAGGAGTGTCGGATAAATCTCATGAGAGGGAGTTGCTAGATTCTGCCCTCGGAGGGTTTGTGGTTTTGTTGTCTTTGAATGGCAAGGTCATCTTCGCCACTAAGGGCTTAACTACCCACACAGGAATTAACCAGATGGATCTGATCGGAAGGAGCTTGCTTGAGTTCTTGCACCCATGCGATCAGATGGAGGTCAAAGACATCCTCACGAGACTGATTGGGAACCAAGAACCACAAAAATGTGAAGTGTTCCTCAGGATAAAAAAGGCAATGAACACGAAACTGACTGGTTGGAAAATTATTCAGTGTTCTGGAAAGAAAAGGTCATCTGCTACACCTGGATCCAGTTGTCTGGTTCTTGAGTGCAGGGTTCTGCCCATTCAGGAGATCACAGAAGTGGATGAAGCATTGAATGCATGTACATTTATGAGCGTTCACAGCCCTGACATGACGTTCACCTACTGCCACTCAAGGGTCGTGAAATTGATCGGCTTTCGAGACACAGATCTGTTGGGTCAATCTGTATACCAGTACTATCATCCATCTGACTGCCAGCAAATCCGCAAGGCACACATTTGCTTGCTCTCCAAGGGTCAAGTGTCGACCGGGAAATACCGGCTGCTGCACAGATATGGAGGTTATGTGTGGGCAGAAACAGACGCCTCACTGGTGTGCAACAGTCAGACTGGTGTGCCAGAGAGTGTCGTCTGCATCAATTACATTCTAAGTGAAGTAGAGCAGCCCAATTTGCCATTTTTACTGGAGAAGACAGAACAACTTCTGAAACCAACATCTAGCTCCTATTGTCCAGAGACAGAACCTGCCCCTTTTCCGCCATCTAGAGGCCAGGAGGGTGAGAAAGATCTCAAGGAATCGAACGAACACAACAGTTTTATAACACATCTGAAACAAAGAGATGGTGACATACAGGAAGTTGAATGTACAGAGATCCCACATAACACAGAAGGGTGTTATGATTTCAATTGTGATCAGTGTGAGTTAGACTTGGACAGTCTTGCTCCATACATTCCCATGCACGGAGAGGACTTCCTGCTAACTCCCATTATAGACAGGGCGATGGACATGCCAGAATTAAACACGTGTAGACCATCATGTAGCAGTCCATCTCAAAACCTGGATTCTTCAGAGGGAACAACCGTTCTGCCAGTGAAGAGTCTTAATTCTACCCAACAAAGTGTCAGTAATTCTTTTCAGACAAAAAGAATCAGCGATACTAACCTGATATCAACCAAGCAGTGGAGTGACAGCTTTGACCTTGTCAACAAAGTTTCAAAGGTTTATGATTACGATCCTAAACAACATAATTATCAACTATTTTCATCTGAAACCAAGGCAAATCATTGGGTGGAGGAGGCTCTGAAATTTCCACAACCCAACAGAGTTCATTGGAACATCGATGGATCAACACCACCATGGATATGTGACGGACACTTGAATCATCTTGAACCGAAGTTCAGATCACTTCCAGAGAAAACCAATTGTCCTCCTCAAAAGAGAAGACACCAACATGAAGTAAAAACAGCCGCGGCACTTTTGACTCTGCCTGTGTTGAGCGGATGGGAGTGTGAAGTCAACGCTCCTCTCGAACACACATCATATTTACTCCAAGGGACAGAGATTATGGCCGTTCTGGACCAAGTAGCCTCCAGAGTGCCTTGGTGCTGATGATTCAAAACAAAAGACTTAATGTTTATGCTTGGTCAGCAATGCGCTTTTATTATATCAATGCCTGTGCGATAGGAGTAATGGACTATAGTGTTTTTCAGTCAACGATGAACGTCCGGTGAAAGTCTATTCTGGTGTGACTATTTTCAaattcataaggttccttttacagccttgatgttgtaatgtagttaaaataatttgtatgggatgacaattaaccagaagccctggggctggctgactgaaattaaaagtctgtgtccATGTACCCCATTATTTTATTCATCTAATAATGAGATTGTAAATGACTATGTTGTTGATACACATGACTGGTCAAAGAATCAGTTTAAAACAACAGGATTGTGTTTAAAAACGTCTCTTATGCTCAGTAaacctgcatttatttgatgCAAAGTAAAgcaaaacagtaaataa

Function

symbol description
hif1al2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in cellular response to hypoxia and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; gill; head; heart; and pleuroperitoneal region.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0071456 cellular response to hypoxia biological_process
GO:0005634 nucleus cellular_component
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050211-2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in cellular response to hypoxia and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; gill; head; heart; and pleuroperitoneal region.

Ensembl:

ensembl_id ENSDARG00000044550

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00038692 True 2522 mRNA 0.43 14 27327442 27338639

Neighbor

gene id symbol gene type direction distance location
XLOC_019652 mark2a coding downstream 54295 27204382 ~ 27273147 (-)
XLOC_019651 zgc:77262 coding downstream 125947 27197711 ~ 27201495 (-)
XLOC_019650 zgc:110782 coding downstream 132119 27192763 ~ 27195323 (-)
XLOC_019649 NA coding downstream 136008 27188124 ~ 27191434 (-)
XLOC_019648 slc8a4a coding downstream 141527 27047333 ~ 27185915 (-)
XLOC_019654 rin1a coding upstream 18129 27356768 ~ 27362938 (-)
XLOC_019655 slc29a2 coding upstream 68842 27407481 ~ 27413294 (-)
XLOC_019656 bfb coding upstream 99228 27437867 ~ 27443995 (-)
XLOC_019657 CAPN1 coding upstream 143510 27482149 ~ 27507786 (-)
XLOC_019658 CR405687.1 coding upstream 219851 27558490 ~ 27566738 (-)
XLOC_019645 NA non-coding downstream 502136 26820922 ~ 26825306 (-)
XLOC_019643 BX465841.1 non-coding downstream 625488 26701821 ~ 26701954 (-)
XLOC_019640 NA non-coding downstream 723801 26600961 ~ 26603641 (-)
XLOC_019633 NA non-coding downstream 932134 26251376 ~ 26395308 (-)
XLOC_019661 AL845282.1 non-coding upstream 607635 27946274 ~ 27946391 (-)
XLOC_019662 BX927322.1 non-coding upstream 724567 28063206 ~ 28063322 (-)
XLOC_019663 NA non-coding upstream 1024835 28363474 ~ 28363814 (-)
XLOC_019664 NA non-coding upstream 1064331 28402970 ~ 28411915 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_03350988_03356496 NA coding CI01000006 null 3350764 ~ 3357157 (+)