CI01000006_03446979_03447865


Basic Information

Item Value
gene id CI01000006_03446979_03447865
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3446979 ~ 3447916 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000006_03446979_03447865.mRNA
GGCTGAATTTTTGCAATATAAAAATGATAGTACCATCAGTAACACTGATGTCAGGAGTGCAGATGCCACTTTTGGGTTTAGGCACATACAAGCTACAGGACCATGAGCAGCTGAAATGGTCTGTCAGCTCTGCTCTTCAAGCAGGATACCGAGCCTTTGACACAGGTGCGGTCTATGGAAATGAGGCACATCTAGGGCAAGTCCTCAAAGAGCTGTTGCCCAAGTATGGTCTAAGCCGTGAAGATGTGTTCATCATCAGCAAGCTTGCCCCATTAGACCATGGGCCGAGGGCAAAGGAAGGCTGCCTGAGGAGTCTGGAGCAACTAGACTGTGAATACATTGACCTCTATCTGGTGCACTGGCCTGGGATGGAGGGTCTTGACCCAGGGGATTCTCGCCATTCAGAGTATCGGGCGCAAAGCTGGGCGACCCTAGAGGAGTTCTATGCCAGTGGGCGATTCAAGGCCATAGGGGTTTCAAACTACACCTCAAAGCACATTAGAGAGCTGCTCATGAGTTGCCGCGTGCCCCCAGCGGTCCTTCAGATAGAGTGTCAACCGAAGCTGATCCAGAGAGAATTGAGGGATTTATGTATAAATACAGGCATTCACTTCCAGGCCTACTCTTCGCTGGGTAAAGGAGCTCTCCTTAGGGAGCCAGAGGTAATGGATATAGTGAGGAGCTGTGGTAGGACCCCTGCCCAGGTTCTCCTCAGGTGGGCTGTGCAGCAAGGCATCTCAGTTCTGCCTCGGTCCTCGCAGCCATGCAGAGTGCAGGAGAACGCGAAGGTGTTTGACTTTGAGCTAAGTGAGATGGATATAATGAGGCTGAACGCCCTAAATTGTGGAACACGGTTTTGTAAACGAGACTCTAGCAAAATAGCTTAAGCGCTGATTTGACAATTTCTTTATTAAAACCAGTGCAAAATGATTTAAAAA

Function

NR:

description
Probable reductase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000006_03446979_03447865.mRNA True 938 mRNA 0.49 1 3446979 3447916

Neighbor

gene id symbol gene type direction distance location
CI01000006_03441003_03442001 NA coding upstream 4024 3440656 ~ 3442955 (+)
CI01000006_03412397_03437333 MARK2A coding upstream 9269 3412397 ~ 3437710 (+)
CI01000006_03350988_03356496 NA coding upstream 89822 3350764 ~ 3357157 (+)
CI01000006_03327370_03334117 RIN1A coding upstream 112277 3327370 ~ 3334702 (+)
CI01000006_03319103_03319306 NA coding upstream 127459 3319103 ~ 3319520 (+)
CI01000006_03483581_03526564 SLC8A4A coding downstream 35665 3483581 ~ 3527202 (+)
CI01000006_03548703_03554763 PPP1R14BA, PPP1R14B coding downstream 100787 3548703 ~ 3554763 (+)
CI01000006_03607868_03614573 LRFN4A coding downstream 159339 3607255 ~ 3614935 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L coding downstream 286638 3734554 ~ 3736035 (+)
CI01000006_03744756_03759381 NA coding downstream 296408 3744324 ~ 3759825 (+)
G41542 NA non-coding upstream 81412 3362995 ~ 3365567 (+)
G41526 NA non-coding upstream 87717 3357535 ~ 3359262 (+)
G41506 NA non-coding upstream 102699 3339239 ~ 3344280 (+)
G41520 NA non-coding upstream 131188 3300085 ~ 3315791 (+)
G41513 NA non-coding upstream 158243 3283664 ~ 3288736 (+)
G41566 NA non-coding downstream 1534 3449450 ~ 3455035 (+)
G41519 NA non-coding downstream 83849 3531765 ~ 3533019 (+)
G41632 NA non-coding downstream 100042 3547958 ~ 3548175 (+)
G41634 NA non-coding downstream 111522 3559438 ~ 3559662 (+)
G41635 NA non-coding downstream 111852 3559768 ~ 3560079 (+)
G41591 NA other upstream 607558 2836167 ~ 2839421 (+)
G41424 NA other upstream 786409 2645662 ~ 2660570 (+)
G41170 NA other upstream 1751158 1692065 ~ 1695821 (+)
G40768 NA other upstream 2953953 488407 ~ 493026 (+)
G40767 NA other upstream 2963644 360009 ~ 484185 (+)
G41996 NA other downstream 1669290 5117206 ~ 5124149 (+)
G43896 NA other downstream 2322173 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 2660568 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 2674119 6122035 ~ 6122751 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location