G41542


Basic Information

Item Value
gene id G41542
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000006
NCBI id null
chromosome length 13024002
location 3362995 ~ 3365567 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU47162
TGCTCACATCACTTTTAAATATTGTTTTTGAACCTTTGGTTTTGTTTCCAAAGCATCAGCACATAATGGCACTTGAGTCTATCTGCCGCAAATGTACTGCAAATTTTCTAAAGGATGCTGAAGGCGAGCAAAAATTACATATACGTTCTCTCTGCTTGCAGTACATCAGTCACGCTTATCAGGAAAGTGACTGAGAACACACACAAACACATTTTTTAATCAAATCATACGTCATCAATAGCCATTTATTCCAGGGTTGCCAGGTTAACACAACAAAACCCGCCCAATTGCTTCTCAAAATTAGCCCAACCATTTGCATTTCGGGGGGTAAAATCCGCATTTTTGGCGGGGTTTCCCTGTTGAAATTTGCATCCCAGGGGCTAAATATCATGTTATTTGGGGTCACCAACTCACGGCAACAGTGTTAAAGTAGCCCAATTCTGCAGGAAAACCACAGACTTGGCAACACTGGTTTATTCCGCATTTTAGTACAATTGCATTTGTTTCAGAAGCGTGCCATACTGGAGCTCACATGAACCGTACCACAGACAACCCTTTTTATGCGGACTCGGTTCATGGGTGCGCACTCGAGTTTGAAAAACACCATTCACATCATCCTAACGAACTCTGACGTTAATCGAACCCAACTGCGCACCAGTGTGAAAGCACCCTAAATATGTTTTAATGCATTTAGCGAATTTGAAATTTCAAAACAGGCAATCTTACAACGACCATGTCATCCACACTCTCCTCTTCTTCATAAGGTTTATAATCTGGCTTCTTTTTCTTCAGCTCCACATTTTTCTCTGCTTTCTCTTTGTCCACCAGACCCACATTCACCAGCACGTCCTCCTTCTCCTCCAGAACACCTGTGAAAATCACCCACACAGAGAAACCAGTTAAGACAACCGTTTCTCCCTCTCTGAAAGAGTCCATCTTGTGTTGAACCTTGAGCCCTTTGAGATGGTGTGAGCCATATGAGTCCTGGTCAGTACAAAAAAAGCTAAACTGAATTAATACATAAATGGATATGCAATACTATCTATACTAATATATATGTTTAAAGAGAAATCTTCCCATCAACAACAGTTAGATGATCAAAGCTAGTTCCTTTCACTGCTGATTAAAGCAGTGGTTCTCAACCAAAGGCCTAAATGAACATTAAAATAAGCTAAACATCAAGATATTTCTTATTTTAATTGACCCCTTCAACAACCATCATATTTATTTAAGAGACCTGGATTTCCACGGTCTTGGAAAACTTGTTTTTGGGGAAGTATAATCTTAAAGGTGTGATTTCTAGACCTGTCATGTACATTAATAACACAAGTAATGGAAATTAATAAATATGAATATAATGAATATAATTTTTTAGTTATGCCAAACTCTGAAACTTTTTATTGGGTAGAAATTGATATTTATAAGTAAAAATAAAAATAAATTCATTCATTCATTGAAGTTTCTGGAATTATGGGATTTATTTGAATTCTCTATTGATATATTATTATAGAATTACTTTAATAATCTGAAAGTCTGAAAATGAGTAGCTTTGTCACTACAGCAGAAGTACCAGAAATATTTAGGGGGCCTTTGAATGTTGTCTTGGGGTCAAAAAGGTTGAGAACAGCTGGATTAAAGTCTGACTGGGGACCAGCAAGAAATTGTCAATAAGGTCACGCACCCTCTTTTCCTGTGCAAACTCCTGCTCGACCAGATTGCTCACACCGAACTCTTCATCCATCTCCTCTAGGAGCTTGGCCTGTTAAGAGGCAGATTACACAGAAGACAAAATAAGAAGACTGATAGAGGAAAAGCGAGACGCAAAGCTAGCCATCTGGTGGTCACAATATCCTACCCCAGTTTCTGATTGAGCAGACGCTTCTCTTTGAGAGCAGCCAGTTTCTCTCTCATCTCAGCCTGCTGTTTGATATGGACTGGATTGATGGTCTCAGCCAGGAGGGGCTCCTCCTTGGTTCCAGCCTCTGAGGAACCATCAAACAATCACAGATTTAGACGAAAAGCTTCAAAAAAGATTGCATTCAAAGCAATGTCAGTTTGGGTCAGTAAGATATCATGTTTTTAAAAGAAGTCTTTCATGCTCAAGGCTGCATTTATTTGATGAAAAATTTAGTAAAAACAGTAATATTATGAAACATTACTACAATTTAAAATAAATTATTTCTATTTTAATATATTTAAAAATGTAATTTATTCCAAAGCTGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47162 True 2225 lncRNA 0.39 3 3362995 3365567

Neighbor

gene id symbol gene type direction distance location
CI01000006_03350988_03356496 NA coding upstream 5838 3350764 ~ 3357157 (+)
CI01000006_03327370_03334117 RIN1A coding upstream 28293 3327370 ~ 3334702 (+)
CI01000006_03319103_03319306 NA coding upstream 43475 3319103 ~ 3319520 (+)
CI01000006_03294091_03298089 SLC29A2 coding upstream 64324 3293988 ~ 3298671 (+)
CI01000006_03232003_03242938 NA coding upstream 119633 3232003 ~ 3243362 (+)
CI01000006_03412397_03437333 MARK2A coding downstream 46830 3412397 ~ 3437710 (+)
CI01000006_03441003_03442001 NA coding downstream 75089 3440656 ~ 3442955 (+)
CI01000006_03446979_03447865 NA coding downstream 81412 3446979 ~ 3447916 (+)
CI01000006_03483581_03526564 SLC8A4A coding downstream 118014 3483581 ~ 3527202 (+)
CI01000006_03548703_03554763 PPP1R14BA, PPP1R14B coding downstream 183136 3548703 ~ 3554763 (+)
G41526 NA non-coding upstream 3733 3357535 ~ 3359262 (+)
G41506 NA non-coding upstream 18715 3339239 ~ 3344280 (+)
G41555 NA non-coding upstream 26986 3268664 ~ 3336009 (+)
G41566 NA non-coding downstream 83883 3449450 ~ 3455035 (+)
G41519 NA non-coding downstream 166198 3531765 ~ 3533019 (+)
G41632 NA non-coding downstream 182391 3547958 ~ 3548175 (+)
G41634 NA non-coding downstream 193871 3559438 ~ 3559662 (+)
G41635 NA non-coding downstream 194201 3559768 ~ 3560079 (+)
G41591 NA other upstream 523574 2836167 ~ 2839421 (+)
G41424 NA other upstream 702425 2645662 ~ 2660570 (+)
G41170 NA other upstream 1667174 1692065 ~ 1695821 (+)
G40768 NA other upstream 2869969 488407 ~ 493026 (+)
G40767 NA other upstream 2879660 360009 ~ 484185 (+)
CI01000006_03734862_03735227 BANF1, BANF1.S, BANF1.L other downstream 363663 3734554 ~ 3736035 (+)
G41996 NA other downstream 1751639 5117206 ~ 5124149 (+)
G43896 NA other downstream 2404522 5770089 ~ 5771775 (+)
CI01000006_06104927_06109730 NA other downstream 2742917 6104927 ~ 6109820 (+)
CI01000006_06122278_06122736 NA other downstream 2756468 6122035 ~ 6122751 (+)

Expression


Co-expression Network