G141591


Basic Information

Item Value
gene id G141591
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14316543 ~ 14317593 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191705
CAGGGTTTCCGCCACGTTCATTTCAGTGCGGCGGTCCGCCACGCCTTCGTTCTTCCCCGCCACCCTTCGTGAAAATTCGGAGCCCGGCGTTTTTCCCGCGCTTGATCAGCGTTGCCCCGCCCTCTCTCGTTTCTGACACTGGAATTTGATCATCTCGACAGGACACCGGCTGTCAAACTGGACAACTGAATCCGAGGTATGTGGCGctgaaatgatgtttttttatatttgtgaacAAGTTGTTGAACATTGTTCAAGGGTTATATCGGTAATATGTTGTAGACGTAGCCTACACAACACGGCTGGTTTCGCATGTTGCATCTATTTCGGGAGGCTACAGGTGAGGGCTTCTCTAGCCGTAATTCCTAAACGCACAGCTGTGTTCCAGTCCTGCACATGTAGCAGGGTGGccgcgggtccttaaaaagtcttaaatggtattaaatttcatttttgtcaaataaggccttgaaaagtcttattttgtcttaaaatttcaaccaaaatgtcttaaatttgcCGGAGCTAAATTTAGGGGGGAATAATTCCGTCAGCCATGTGTTGAACTTCGGGGGTGGAAATCGGTAGTTAGTCATGCAGTGCCAACATAACgcgcgcgcgcgcgagagagagagtgtgagtataggacacagcgagagagagagagagactgaaacataacgcgagagagagagagagagcgagagcgcgcctgtaaatagcgagagagagagactgaaacataatgcgagagagagagagagagagagagagactgaaacataatgcgcgcgcgcgagagagagatgaattaaacagtgattaaacagcttcaacttacgcaggtgtccactcaggctcactcacctggtggagtgaaaatcacgctatgtttctgtttctggagcTGTCATAAAGCAAGGATGTAGGGCCCTAGAATAGAGGCACCCTAGAACAGCTCTGTGATGCATTTGTTTTCACGGtcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191705 True 986 lncRNA 0.48 2 14316543 14317593

Neighbor

gene id symbol gene type direction distance location
LOC103038528 LOC108440662,LOC107550699,LOC107664020,LOC107732576,LOC107746923,LOC107686037 coding downstream 62237 14240791 ~ 14254306 (-)
LOC103037671 NA coding downstream 77894 14234299 ~ 14238649 (-)
march6 march6,LOC107664076,LOC107732575,LOC107746911,LOC107686038 coding downstream 107707 14168687 ~ 14208836 (-)
LOC103036718 NA coding downstream 152446 14146560 ~ 14164097 (-)
LOC103035184 si:dkey-94e7.2,LOC108440665,LOC108268141,LOC107686084,LOC107586344,LOC107732574,LOC107746919 coding downstream 420124 13884862 ~ 13896419 (-)
kif9 kif9 coding upstream 93007 14410600 ~ 14436386 (-)
ino80b ino80b,LOC107696741 coding upstream 281875 14599468 ~ 14604285 (-)
clcn3 clcn3,LOC107696737,LOC107692822 coding upstream 327885 14645478 ~ 14697354 (-)
nit1 nit1 coding upstream 381335 14698928 ~ 14704798 (-)
trnas-gcu_1 NA coding upstream 457932 14775525 ~ 14775606 (-)
G141462 NA non-coding downstream 103608 14212607 ~ 14212935 (-)
G141457 NA non-coding downstream 122208 14188516 ~ 14194335 (-)
G141455 NA non-coding downstream 125007 14185613 ~ 14191536 (-)
G141453 NA non-coding downstream 127830 14182044 ~ 14188713 (-)
G141449 ctnnd2,ctnnd2b non-coding downstream 156660 14139873 ~ 14159883 (-)
G141594 NA non-coding upstream 26436 14344029 ~ 14349057 (-)
G141601 NA non-coding upstream 71777 14389370 ~ 14391057 (-)
G141608 NA non-coding upstream 78814 14396407 ~ 14408242 (-)
G141611 NA non-coding upstream 105467 14423060 ~ 14427484 (-)
G141612 NA non-coding upstream 106579 14424172 ~ 14426666 (-)
G141581 puf60,LOC108268151,LOC107718021,LOC107599879,LOC107558234,LOC107701012,LOC107657443 other downstream 46646 14261274 ~ 14269897 (-)
fam173b fam173b,LOC108440663,LOC106941709,LOC107578923,LOC107550697,LOC107746922,LOC107664046 other downstream 102227 14210445 ~ 14214316 (-)
G141383 NA other downstream 405941 13909184 ~ 13910602 (-)
tcea1 tcea1 other downstream 452465 13855557 ~ 13864078 (-)
LOC103040388 LOC108440660,LOC107686045,LOC107746915,LOC108268132,LOC107732591 other downstream 731149 13512152 ~ 13585394 (-)
G141636 NA other upstream 210694 14528287 ~ 14528908 (-)
LOC103040495 actn3,actn3b,LOC108440266,LOC107692831,LOC107747950,LOC107696733 other upstream 675427 14993020 ~ 15044150 (-)
LOC103039667 rbm14b,LOC108440267,LOC107696734,LOC107728024,LOC107567604,LOC108267504 other upstream 731777 15049370 ~ 15065391 (-)
G142037 NA other upstream 2447149 16764742 ~ 16765263 (-)
ss18 ss18 other upstream 3704641 18022234 ~ 18042068 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G129895 NA non-coding CI01000026 null 4895323 ~ 4896969 (-)
mexican tetra (Astyanax mexicanus) rims4 rims4,LOC107666126,LOC107696477,LOC107708122 misc NC_035909.1 CM008312.1 6731144 ~ 6866913 (+)