LOC103037671


Basic Information

Item Value
gene id LOC103037671
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 14234299 ~ 14238649 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260192.3
cccgcgagtgagtccaaaattaataggggtgaatggagctaaacggctaaaaacttacagtaaaacagtaacTCATCACTCAGTCAGAATATTCCTTTACTTTTAGAAATtagatttatgtatttttctagacgaaaaaaaaaattactgtatgttttagtttttatacagtaagcaggttttaggcagtaaaggagctagcattactgctactgtgagctgagcTAATACTGTTTAGTGAGCTGATGTTGGAGTTACAGACCGAGCTCTGAGTTTAAAAGGTTcaacatatatttttactacGGTAACATCTGATATTCTTCTGTGAATATTCTgagaatatttacatttttcagtatgaaaattATTTAACATTCATAAACTCTGATTTATCTTAGTTGCTCCATATGAAACCATCCTGAAGTGGGTTTTCTCCTCGATATTGGAGATTCTGTAGCTGCGGGTCTTCAGTGTAGAAACACTGCAGACTGTTGGAGATTAAAGTGGATTCAGAGCTGTTTATTGTATTTGATCAGATCCAGAAACAGGTGTTATCTGTGGTTTTAAATGAAGATACTCTCTGTAGGGTAAAACTGAGGGGTGATTGGATGTGATTTTTCTCCTCTGGTCTCTTCAGTAAAGCGGAGCAGCAGAAGGTAGATCAGCTCTGATCATCAGATCCACATCTCTGTACTCAGACCTCTGATCTGCTGGAGGAACTTCATCAGCTCACCTGCTGCAGAAATGGATGCCATCCTGTTTCAAGTCTTCTGCTGCTCCTAGTATCTACTTCCCTGCCTGGTTGAAAACAACGTCTGACTAGTTCACAAAGCCGTTGATGCTGATGAAACAGCATGGCGACAGACATGGCATCCAGAGAAATCTCCAATACTCAGCAAATATCTTCTCCTTCACCTCACAGGCAAGTGCAGCACAgtacagagaaaaaacaaactGACCACCACTCTGACTGTGgcaagagttttactcaaccgAGTCATCTCAGAACACACCAGCTTTCTGACACCGGGGacaaaccatatcactgctcagattgTGGGAAAAGCTTTGATTTTCTGAGTACTCTCCAAAGACACAAGCTCATtcatacaggagagaaaccatttcagtgttcagactgtgggaaaacTTTCAACCTTCAGAGTAATCTCCGCCgccaccagcgcgttcacacaggagagaaaccgcatCAGTGCTCggagtgtggaaagagtttttgTGAACAAATGAATCTCAaagaacaccagcgcattcacactgaaaagaaaatgaatcagAGCTCAGAATTTGAGAAGAGTTTTAGTGAAAAGTCTGAAAAGTCCAGTCTCCAAGAACATCAACACATTCGCACtagagagaaaccatatcactgctcagattgTCGGAAAAGCTTTGATTTTCTGAGTACTCTCCAACGACATCtgctcattcacacaggagagaaaccatttcaatgttcagactgtgggaaaacTTTCAATCTCCAGAGTAATCTCCGGCGCCACGAGCGCGTtcatacaggagagaaaccgcatCAGTGCTTGgaatgtggaaagagttttagtgAACTGACGAATCTCCaagaacaccagcgcattcacactggagagaaacccttTCAGTGCCCAGTGTGTGGGAAGAGCTTTGCTCAAAAAAGTCATTTACAAGAACACAAACACGTTCATACAAGAGAGAAACCTTTTCACTGCTCTGAGTGTGGGAAAAATTTTACACATCAGAATACCCTTAAattacaccagcgcattcacactggagagaaaccctttgagtgctcagactgtgggaagagttttacacAGCACAATTATCTCAAACAACACCAGCTCACTCACAcgggagagaaaccatatcactgttcagactgtgggaagagttttactcatcaGAGTGCGCTCCAGATACACCAGCTcactcacacaggagagaaactgcatcagtgctcagagtgtgggaggagttttagtCAAAAGTGTCATCTTCaagaacaccagcgcattcacacaggagagaaaccctttcgctgctcagagtgtgggatgAGTTTTACATATAAGAATTCTCTCAAACAACACCAACGCATTCATACTGGAGTGAAACCGTTtcagtgctcagactgtgggaagagttttgtTAGAAATAATTATCTCATAGAACACCAGCGCGTtcatacaggagagaaaccataccactgctcagactgtgggaagagttttaattaTTACAGTTCATTCCAAAAACACCACGTCATTCACACAAAAgggaaaccatatcactgctcagactgtgggaagagctttcGCAAACAGAGTTACTTccaaatacaccagcgcattcacactggagataaaccatattactgctcagagtgtggagaGAGCTTTAGGTTTTCACAAGCATTCAAGAAGCACAAGTGCATTGAGATTAGTGATGGAAATGGGCAGTGACTCACCTAAAATCAGTCCAGCTCCCAATTGAACTTGTATTGAGGGAAAACTgttgctttaaacagtgcagcaTGTAGTCCATACACTAAATATATCCTTCCTAGTCAGATGCTAAAGTACAGTATTtaacactataaggcacacagaATTATAAGGCGCcccatcaataaacatctattttctggtttattttcatacacaaggtgcaccagattatatggcgcattatgtgacactagtaaggaacaggggtgttggcaTGATTTCCTCCTAATTTAGCAGGCCTCGCCGCTGGGTGGCAAGACTTGTAAAgctatgttaaaaaatattttatagtcaaacaagcgctggttgtttgttaatttacacagatttctctcctgtatactttttatttgggtgagtaaagcacttccgtttatttacagtaagcttagattactaCCAAGGCTGCCAGACTGCgctatactgaggaaccctgagtcttCTGGTAAGTCAGGGTGaaattagctagcggttcatcccatgtagcttgttttaagatggtaaacacgcagactacagtcccataatactcacctctgaacagcgaaagagataactagca

Function

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260192.3 True 3093 mRNA 0.42 2 14234299 14238649

Neighbor

gene id symbol gene type direction distance location
march6 march6,LOC107664076,LOC107732575,LOC107746911,LOC107686038 coding downstream 25463 14168687 ~ 14208836 (-)
LOC103036718 NA coding downstream 70202 14146560 ~ 14164097 (-)
LOC103035184 si:dkey-94e7.2,LOC108440665,LOC108268141,LOC107686084,LOC107586344,LOC107732574,LOC107746919 coding downstream 337880 13884862 ~ 13896419 (-)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding downstream 440027 13689223 ~ 13794272 (-)
LOC103032206 oprk1,LOC108440658,LOC107664042,LOC107732559 coding downstream 598802 13626832 ~ 13635497 (-)
LOC103038528 LOC108440662,LOC107550699,LOC107664020,LOC107732576,LOC107746923,LOC107686037 coding upstream 2142 14240791 ~ 14254306 (-)
kif9 kif9 coding upstream 171951 14410600 ~ 14436386 (-)
ino80b ino80b,LOC107696741 coding upstream 360819 14599468 ~ 14604285 (-)
clcn3 clcn3,LOC107696737,LOC107692822 coding upstream 406829 14645478 ~ 14697354 (-)
nit1 nit1 coding upstream 460279 14698928 ~ 14704798 (-)
G141462 NA non-coding downstream 21364 14212607 ~ 14212935 (-)
G141457 NA non-coding downstream 39964 14188516 ~ 14194335 (-)
G141455 NA non-coding downstream 42763 14185613 ~ 14191536 (-)
G141453 NA non-coding downstream 45586 14182044 ~ 14188713 (-)
G141449 ctnnd2,ctnnd2b non-coding downstream 74416 14139873 ~ 14159883 (-)
G141591 NA non-coding upstream 77894 14316543 ~ 14317593 (-)
G141594 NA non-coding upstream 105380 14344029 ~ 14349057 (-)
G141601 NA non-coding upstream 150721 14389370 ~ 14391057 (-)
G141608 NA non-coding upstream 157758 14396407 ~ 14408242 (-)
G141611 NA non-coding upstream 184411 14423060 ~ 14427484 (-)
fam173b fam173b,LOC108440663,LOC106941709,LOC107578923,LOC107550697,LOC107746922,LOC107664046 other downstream 19983 14210445 ~ 14214316 (-)
G141383 NA other downstream 323697 13909184 ~ 13910602 (-)
tcea1 tcea1 other downstream 370221 13855557 ~ 13864078 (-)
LOC103040388 LOC108440660,LOC107686045,LOC107746915,LOC108268132,LOC107732591 other downstream 648905 13512152 ~ 13585394 (-)
G141255 LOC108413406 other downstream 795403 13436631 ~ 13438896 (-)
G141581 puf60,LOC108268151,LOC107718021,LOC107599879,LOC107558234,LOC107701012,LOC107657443 other upstream 22625 14261274 ~ 14269897 (-)
G141636 NA other upstream 289638 14528287 ~ 14528908 (-)
LOC103040495 actn3,actn3b,LOC108440266,LOC107692831,LOC107747950,LOC107696733 other upstream 754371 14993020 ~ 15044150 (-)
LOC103039667 rbm14b,LOC108440267,LOC107696734,LOC107728024,LOC107567604,LOC108267504 other upstream 810721 15049370 ~ 15065391 (-)
G142037 NA other upstream 2526093 16764742 ~ 16765263 (-)

Expression


Co-expression Network