stam (stam,LOC107664071)


Basic Information

Item Value
gene id stam
gene name stam,LOC107664071
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12596820 ~ 12612107 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235290.3
ATATGATAGCGGAACGCTTTGCCTTGTCTGCATTACAgccttttctctctgtttctattaggaaaacaaaacagagggCCTGCAGTTAAGTTAGCTGTTGTTGTTTGCGATCGGGTCGTGTATCTAGGTTAACTAACTTAACTAATTAACCCGTTAACTAGCTAAGCTATCCATGTGGCGAACAGCGTGTACTACATACGCTACGTTATAGTATCTGGCGTTAGTtagtgtgtatctctgtgtgtgtgtgtgtgtggtgacagCGCTGCTCCTGCTCCCTCCAGCCTGATGCTGTGTCTGTTGTTGCAGCTGCTGCTGAGGGGGCTCTCCGCTGTTTAGCtcagttagttagctaacctagctaagctaacttagatCAGTCAGTCCTTCTGCGGCaactttattatgtttattaatttagctatTAAGTAACTTAAGTGCTGACAGTAAAAGGGGAAACAGAAGAGGACTGGGTTCAgacttatctctctctctacctgctGATCTCCTTCCTTTACATCCTCCCGGCAATGCCTCTATTCACGTCCAATCCTTTTGATCAAGATGTGGAGAAAGCGACCAGTGAGATGAACACAGCTGAGGACTGGGGCCTTATACTGGACATATGCGATAAGATAGGACAGTCACGGACTGGGCCAAAAGAATGCCTTCGTTCCATAATGAGGAGAGTCAACCACAAAGATCCCCATGTAGCCATGCAAGCACTGACATTATTAGGTGCTTGTGTGTCAAACTGTGGAAAAATCTTCCATTTGGAAGTGTGCTCCAGAGAGTTTGCAAGTGAAGTCAGCAATGTCTTAAATAAGGGTCACCCGAAGGTGTGCGAGAAGCTGAAGGCTCTTATGGTGGAGTGGGCCGAGGACTTCCGGAACGACCCGCAGCTCAGCCTCATCTCTGCTATGATCAAGAACCTGAGAGAACAGGGCGTCACCTTCCCAGCTGTTGGATCGCAGGCAGCAGAACAGGCTAAAGCTAGCCCGGCATTAGTGGCTAAAGACCCAGCAACATCCACAAAcaagaaagaggaagaagatcTGGCCAAAGCGATTGAACTGTCTTTGAAGGAGCAGCGGGTGCAGCCCCAGACCTCCCTCTCGGGACTGTACCCCAGCGCTAACAGTCTCTTGACTTCACACAAGCCTGAGGGCAGGAAAGTCCGGGCCATCTACGACTTTGAGGCAGCAGAGGACAACGAGCTCACTTTTAAATCTGGAGAAATCATCACCATCCTGGATGACAGTGACCCAAACTGGTGGAAGGGTGAGACCTATCAGGGCGTGGGCCTCTTTCCATCCAACTTTGTGACCGCAGACTTAACAGCAGAGCCAGAGATGATGAAAACGGAGAAGAAGACTGTGCAGTTCAGTGAGGAAATCAAGGTGGAAACTATCGAACCAGAGCCTGAGCCAGTCTACATAGATGAGGAAAAAATGGACCAGCTGCTACAGATGATCCAGAGTGCAGACCCAACAGACAACCAGTCAGATAGCTGTGAGCTGCTCCAGCTGGAAGgtGCCTGTAACCAAATGGGCCCACTCATTGATCAAAAGCTGGAAGACATTGACAGAAAGCACTCGGAACTGTCAGAGCTCAACGTGAAGGTTATGGAGGCTCTCTCGTTGTACGCCAAGCTGATGAACGAAGATCCTGTGTATGCCATGTACGCCAAGATGCAGAGCCAGCAGTACTATATGCAGCAGCCCAACGCCTCCCAGCAGatGTATCCCGGCCAGGTGGCATCAGGGCAGTATGCGATGCCTGGCACAGGTGTGCCGGGTTACAGCGTACCCGTGGAGCAGCTTCCTTCCATGAACCAGGTGCCGACTGCCATGTCCGGCCAGCCAGCCCCAAGTGATGTTCACATGTACATGGGCCAGCCTCCAGTGTACAGCGCGGCTGCTCCGGGCAGCATGCCTCCTGCAGCAGATGTGCAGGCTTACCAGAACGCAGCAAGCGGGCCAGCAGGCATGGCCCAAACTCCCAGCTACACTGTTCCTGCCACCCATAACTTAACCAACCCTACAGACACCCAACAGAGCCCTTATCCGGAGAAAGCCCTGTTATAGGACCCTATAGAGACTGCTCTCCtatctcccctctctctctctttctctctcattgtctcacacacacactacgaACAAAGAGGCCGTTCATGCAAGTTTGACACTAAAACCAATATGACTAAAGGTCAAAGGTACTTAGAACCTAAACATTCAGAACTATCTCTTtggttgcttttttattttctcagtaATGCATCCAGACACTAAAAAGAAGCATCCGCAGAAACACTGAAACTTACCATGTGTAAAAAGATGCCAGATATTGACTACTGACTGACATTCGTTGTGCAATTCTGTAAGTAACGCTGATTGATCAGCACCTGTTTATTGCTTTTTTCCCTCcacattttcttcttttaaggaaaaaaaaaacattgcatcaGATGTAGAAAAGTCTTAAAGGAATACTTCCccatttaaaaagagaaaaacctaa

Function

symbol description
stam Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in early endosome membrane. Predicted to be part of ESCRT-0 complex. Is expressed in immature eye and nervous system. Orthologous to human STAM (signal transducing adaptor molecule).

NR:

description
signal transducing adapter molecule 1 isoform X2

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process

KEGG:

id description
K04705 STAM; signal transducing adaptor molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235290.3 True 2523 mRNA 0.48 14 12596820 12612107

Neighbor

gene id symbol gene type direction distance location
LOC103028177 LOC108437218 coding downstream 7077 12583877 ~ 12589743 (-)
LOC103032996 NA coding downstream 475544 12056835 ~ 12121276 (-)
LOC103032062 NA coding downstream 546377 11974748 ~ 12050443 (-)
LOC103031742 NA coding downstream 628419 11945426 ~ 11968401 (-)
LOC103027519 NA coding downstream 764556 11819859 ~ 11832264 (-)
LOC103028809 colec12,LOC103028809,LOC108437226,LOC108267818,LOC107686068 coding upstream 6044 12618151 ~ 12703278 (-)
LOC103029125 yes1,LOC108437224,LOC107713975,LOC107584194,LOC107686048 coding upstream 128277 12740384 ~ 12822960 (-)
LOC103030941 lpin2,lipin2,LOC108413408,LOC107686047,LOC107584234 coding upstream 836168 13448275 ~ 13509530 (-)
bag1 bag1,LOC107746903,LOC107664079 coding upstream 976409 13588516 ~ 13591700 (-)
LOC103031885 chmp5,LOC108440659,LOC107732555,LOC107664100,LOC107586329,LOC107558945,LOC107686086 coding upstream 981650 13593757 ~ 13599834 (-)
G141024 NA non-coding downstream 215289 12378935 ~ 12381531 (-)
G141013 NA non-coding downstream 261592 12333455 ~ 12335228 (-)
G141000 NA non-coding downstream 329112 12267167 ~ 12267708 (-)
G140897 NA non-coding downstream 542664 12053861 ~ 12054156 (-)
LOC111194201 NA non-coding downstream 622176 11972057 ~ 11974644 (-)
G141136 NA non-coding upstream 125287 12737394 ~ 12818134 (-)
G141164 NA non-coding upstream 288135 12900242 ~ 12900443 (-)
G141171 NA non-coding upstream 323764 12935871 ~ 12936079 (-)
G141179 NA non-coding upstream 372760 12984867 ~ 12990455 (-)
G141180 NA non-coding upstream 394020 13006127 ~ 13006998 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other downstream 24673 12472804 ~ 12572147 (-)
G141020 NA other downstream 181665 12348559 ~ 12415155 (-)
G140975 NA other downstream 421826 12173695 ~ 12174994 (-)
G140772 fam134b other downstream 986291 11606235 ~ 11610529 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 2082013 10511089 ~ 10514807 (-)
G141220 NA other upstream 703784 13315891 ~ 13316365 (-)
G141255 LOC108413406 other upstream 824524 13436631 ~ 13438896 (-)
LOC103040388 LOC108440660,LOC107686045,LOC107746915,LOC108268132,LOC107732591 other upstream 900045 13512152 ~ 13585394 (-)
tcea1 tcea1 other upstream 1243450 13855557 ~ 13864078 (-)
G141383 NA other upstream 1297077 13909184 ~ 13910602 (-)

Expression


Co-expression Network