G141136


Basic Information

Item Value
gene id G141136
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 12737394 ~ 12818134 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU191084
caaaaaaaaaaaaaaaagaaatttggGAGTGAAGGGTAGATAGAATCTGACAGATCTGACGGATAGATAGAATTCATCAAAGCAACTCGCCAAATCACAACCAACATTttacaaacaaattaaaatatagtataGAAAAAGACGGCCCTCGTAGCTGGTGACACCAAGATATAGTGAAGTTCTTTAGTCCACTCACTAAACTCAAAAAGTTTAGTATgatgtgaaaccaaaactgatcagacaaaatattcagtacacagtgtaaaaaaggcataaacCTTGGTCCAGATATTCAGGTGTAAACAACAAACTGATTCAAACCATGGAGAAAATGTTCCAAGTTTACAAACCTGTGCACTGATTTCAACCAGAGCAAACCAACAAACTATAGGTATGAAAACTCCCTTAATCTGTGAAAACACCAGGGTCCGACTCTAAACATGACAAATGCTGTAGTGCTTTCATTTACTCATACATATCAGCCCTGGATTCTGAAGATATCTGATCTGTTGTTGTGCTACGAAATGAGCCGTCACTTCATTTCTTATTAGAAGAACCACTGAGACACCTTTAGTAAACCAGTAACAGTACTCACATGCTTAACATCCACACCATCCTGCTGAGGACGCCTGATCTCGTGCAGTCGTCTTATTTCTGGAACTCTGTCGCCCTCTGTGGTCTGCTGTTGGCCTAAGCTGAGGAGTTGTAGGACCCTGTGTATGTTACAGCTCTGAACAACTTCAGATAAGATGGGTTTACATACGGAAGCTTTTGACACTGAACTTCGGGTTCAACTTAAGCTGAAACGCTTCCGGTAACAACGCGCCTTCTTCCAGCCTGACTTGAGGAAAGAGCTTTAAGGTTCTTAACATTTATGCGACacctcatcttcatcatcatgcTGTGATAAATAAGTCCTTTCACTCCTTCCGTTTGAAATGATACAATACGAAATGAAACATTACTTGGATGTGATTTCATAAACggtgatttttagttttttagtagATGTTTCAAATGGACAAAGCAgatgataataatattatagtaGTGTATTAACAATCCATAACAGTTCTTACCTCAATAACAGTTCGCTAcaagtggtgtgtatgtgtgtgcgttgGTAAGACGTCACCAAAGCTGTCTTTGGTTTGGTTTCGTAATTtggtttaaaagaaaatgaaaggaaagGATGTGAGATAAAGCTTAAGATGATAAAATGAGTTGGTATATGTTCACTCCTTCTTCAGATGCTCCTTTAGAGGTGTTTAGAGAAGCCTCGGCTTTTGTTCTCCACCATTGTGATTCCTTTTGTCCAGGGGTCAAGAGTTTCCTCATTgttatgaaaatgaaaatcacCAAGCAATCCCCCTTTTTCACAGCACCTCCAACCCCCCTCCTTTTGTTTTTCCTTCTAGAAAGCCGTGGGGTGTTTTTTAAAAGGGCTATGGACTAAGTTTGTGATAAATCTTTAGTTCTTTCATGAGGACTTTTTTAAAGAAGAGATGCAGGCCGGGTGCAGGCCAGAGCCTTGAGCAGGAACGGAGCGAgcgtggaggaggaggaggaggaggaggaggtgggcgATGCGACATGTTGGCAACAAATTACTAACCTGAAGAAATTTGTAcagtgaaaaataaaagttttacgTAATGCTTTTCACTTGCCTGCAGCTTTGTTTGTGCAACGGATCAAAAACACCAATACTAGCGTTATTCATTTGATGTGGAACCGGCACGCTCTGGTTCGTGACCCTCATTTTGAACCGATTTGCCACGTTTCCActaacaaaagtaggttctggaACCAGAAACGTTTGTTGCAAAGGGGGCTGTGCAATGCCTTCTGTTGATGACGTATGATGTGACATTTTTACGGATCCACTAAAACTAGGTTCGCTGAAAAGCAACGTTACGttggtggaaaagtgctatacttgattttttttttttctttggttccAAATTTTCATCTGACCATAGTTTTGTCACAATAATTTCACAAATTTTTACatgtactgtattatattagggctgtgtattggcaagaacttcgTGATACAGTATGCATCATGACAGAGGGGTCATGATTCtgtaaagctctgaaaaaaaaatgagaccactttaaaattctctgattttactatttatatgtatatgtttgagtgaaatgaacattgttttattctctaaactactgacaaaatttctcccaagtttcaaattaaaacattgtcatttagagcgtttatttgcagaaaatgagaaatggtcaaaataatgaaagaataatgcaaagaacacaTCTTGGTATTGTATTGATTTATAAACAACAATAGCACCTGCCCATTTGGCTCTTACtgcccaaagtgccctttttcatatatatatatatatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191084 True 2402 lncRNA 0.38 2 12737394 12818134

Neighbor

gene id symbol gene type direction distance location
LOC103028809 colec12,LOC103028809,LOC108437226,LOC108267818,LOC107686068 coding downstream 34116 12618151 ~ 12703278 (-)
stam stam,LOC107664071 coding downstream 125287 12596820 ~ 12612107 (-)
LOC103028177 LOC108437218 coding downstream 147651 12583877 ~ 12589743 (-)
LOC103032996 NA coding downstream 616118 12056835 ~ 12121276 (-)
LOC103032062 NA coding downstream 686951 11974748 ~ 12050443 (-)
LOC103030941 lpin2,lipin2,LOC108413408,LOC107686047,LOC107584234 coding upstream 630141 13448275 ~ 13509530 (-)
bag1 bag1,LOC107746903,LOC107664079 coding upstream 770382 13588516 ~ 13591700 (-)
LOC103031885 chmp5,LOC108440659,LOC107732555,LOC107664100,LOC107586329,LOC107558945,LOC107686086 coding upstream 775623 13593757 ~ 13599834 (-)
LOC103032206 oprk1,LOC108440658,LOC107664042,LOC107732559 coding upstream 808698 13626832 ~ 13635497 (-)
atp6v1h atp6v1h,LOC107664082,LOC107686042 coding upstream 871089 13689223 ~ 13794272 (-)
G141024 NA non-coding downstream 355863 12378935 ~ 12381531 (-)
G141013 NA non-coding downstream 402166 12333455 ~ 12335228 (-)
G141000 NA non-coding downstream 469686 12267167 ~ 12267708 (-)
G140897 NA non-coding downstream 683238 12053861 ~ 12054156 (-)
LOC111194201 NA non-coding downstream 762750 11972057 ~ 11974644 (-)
G141164 NA non-coding upstream 82108 12900242 ~ 12900443 (-)
G141171 NA non-coding upstream 117737 12935871 ~ 12936079 (-)
G141179 NA non-coding upstream 166733 12984867 ~ 12990455 (-)
G141180 NA non-coding upstream 187993 13006127 ~ 13006998 (-)
G141217 NA non-coding upstream 469992 13288126 ~ 13288373 (-)
LOC103027860 cacnb2b,LOC108437228,LOC107664070,LOC107713974,LOC107751551,LOC107585874 other downstream 165247 12472804 ~ 12572147 (-)
G141020 NA other downstream 322239 12348559 ~ 12415155 (-)
G140975 NA other downstream 562400 12173695 ~ 12174994 (-)
G140772 fam134b other downstream 1126865 11606235 ~ 11610529 (-)
G140472 slc4a2,LOC108413474,LOC107718031 other downstream 2222587 10511089 ~ 10514807 (-)
G141220 NA other upstream 497757 13315891 ~ 13316365 (-)
G141255 LOC108413406 other upstream 618497 13436631 ~ 13438896 (-)
LOC103040388 LOC108440660,LOC107686045,LOC107746915,LOC108268132,LOC107732591 other upstream 694018 13512152 ~ 13585394 (-)
tcea1 tcea1 other upstream 1037423 13855557 ~ 13864078 (-)
G141383 NA other upstream 1091050 13909184 ~ 13910602 (-)

Expression


Co-expression Network