pigk (pigk,LOC107751867,LOC107599845)


Basic Information

Item Value
gene id pigk
gene name pigk,LOC107751867,LOC107599845
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3381575 ~ 3416309 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250667.2
GTTGAAAGGGAGATTTCGATTTCCTAGAACAGAGGGCGAAGCTGCAGCTGCTCCCAGATGAAATTTCATCATGGCAAATTATTTCACATTTCTGTCAATATTTGCTTTTATTAATGTGCTCGTTTTTCTGCCAGTGATACACGGCAATAGCTTTGAGACTAAAGCCTCTCAGTTCTTCAGCAGCGGTCACACCAACAACTGGGCAGTGCTGGTTTGCACATCCAGGTTCTGGTTTAACTATCGACATGTTGCCAACGTGCTGTCTGTGTACAGGAGCGTGAAGAGGCTGGGCATTCCAGACAGTCACATCGTGCTGATGCTGGCTGATGACATGGCCTGCAACCACAGAAACCCCAAGCCGGCCACAGTGTTCAGCCACAAGAACATGGAGCTGAATGTTTACGGAGACGATGTGGAGGTGGATTACCGCGGCTATGAGGTGACTGTAGAGAACTTTTTGCGAGTCCTGACTGGACGGCTCCCGCAGAGCACCCCTCGCTCCAAACGGCTACTGTCTGACGACCGCAGCAACATCCTCATCTACCTGACAGGTCACGGCGGCAACGGCTTTCTGAAATTCCAGGACTCGGAGGAGATCAGCAACGTGGAGCTCGCTGATGCGTTTGAGCAGATGTGGCAGAAGAGAAGgtACAACGAGTTGCTGTTCATCATTGACACCTGCCAGGGAGCTTCCATGTACGAGCGCTTCTACTCGCCCAACATCATGGCTCTGGCTAGTAGCCAGGTGGGCGAGGACTCTCTTTCGCATCAGCCAGACCTTGCCATCGGGGTTCATCTGATGGACAGATATACCTTCTATCTGCTGGAGTTCCTGGAGGACATTCATCCTGCTAGCCAGGCCAACATGAACGATCTGTTCAAGGTGTGCCCGAAAAGCCAGTGTGTCTCCACTCCTGGCCACCGCACTGACCTGTTCCTGCGGGACCCTGGAAGCGTCCTCATCACCGATTTCTTTGGAAGCGTCCGTAAAGTGGAGATAACCAGAGAAGCCATCAACTTAACCACTACTGCTGAACAGCCTGTGGAAGTAACGTCTGTCAGAAGGGAAGTGAAGAGTGAAGCCCTGTCTTATGTGGACCAATTACCTGTGGCTGAAATCATTCATCAGAAACCCAAGCAGAAGGACTGGCACCCTCCGGACGGCTTTATCCTGGGCCTGTGGACCCTCATCCTGCTGGTGTTCTTCAAAACCTACGGCATCAAACACCTCAAACACATCTTCTGAGGGGCTCAGCAGCCGGACCACCTTCCTGGAATGCTcgagcagctctctctctctctgcttggtgctcataaattattatttctatttgcCTGCCTGGTGAAAGTTTCATCGTCAGCGCTCGTTCTTTTCAGAAAGTGACCTAGACTGAAGGCCGGCGCTGAAAAGCGGCACCACTGACTGCTGGCTTTCAGAGCTGCTTTGTTGACCCTGTGCTCACAGGCTGTGATCTgggcattttctttttcttatttcttttttctcctccggTTATTCTACTCTTTTTATATACAGCAGCCAAGGACGAATCCCAATCGCTACGATTAGACTCAAAACTGCAAAACTCTCCTGTTGTCTCTCACAGCACTTTTCGTGGATGTGAAACCAGCATCGCTCTGGTTcaaaacctaattttgaactgtTCGCTGTGTTTCCACCCacaaaagtaggttctggaACAAGAAATGTTCAGTTGAATCGGGAACTCGAGCCTCgagcggttctgatacatcggctcacagatgcagacttgtgctgatccacatcaccctagaagcaatgagggggaaagagcgccatctacccacacagagagagcaagaccaattgtgctctctcagggctccagcagatggtggcaagctgcatgactgggatttgaaccagcaatctctccCAATCATTGGGTGTGCCCCACTGTACCATCTCCCTTTTATCCCTCAGTCCTCAGTTCTAACCAAATCTATTCTTTATCTTTTGTAAATATGGTTCATTCTACTTTAAATCATTTACTCTTATGATTTTTGAATGAATTTTGTATTCAAAGCTACTGAGTTTAACTCTAATGCACTGAATTAAGGTTTATAAGTGTGTTTATTAGGTTTGCTTGaatgtacattttactgtatgCTTGAAGGAATGCGTATGCATCAgtaacacagcaaaaaaaaaaaataaaaaagaccaattgtgctctctcagggctctggcagctgatggcaagctgcaaatagttttttttttttttgtataatgtaacattataataacaatGCATTATTTGTCCACAGTAGATGCACACCTTCAGCTTGTCTTCAGCTAAATAtctaataatacaatttaaataaaacttaaagtaTCCATTCAAAAAATTCTCATTCACTGAAAATTAATTGGCGTTTTTTGTCCACATATTGCCTTTGTAATGGTTCATGTTCCAACAAcagaataaatgaattaa

Function

symbol description
pigk Predicted to enable GPI-anchor transamidase activity. Acts upstream of or within detection of mechanical stimulus involved in sensory perception of touch and protein localization to cell surface. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human PIGK (phosphatidylinositol glycan anchor biosynthesis class K).

NR:

description
GPI-anchor transamidase

GO:

id name namespace
GO:0050976 detection of mechanical stimulus involved in sensory perception of touch biological_process
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0006508 proteolysis biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0003923 GPI-anchor transamidase activity molecular_function

KEGG:

id description
K05290 PIGK; GPI-anchor transamidase subunit K

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250667.2 True 2483 mRNA 0.46 11 3381575 3416309

Neighbor

gene id symbol gene type direction distance location
dnajb4 dnajb4,LOC108430719,LOC107599850,LOC107751861,LOC107681825,LOC107690981,LOC107566472 coding downstream 197040 3177666 ~ 3184535 (-)
LOC107197653 NA coding downstream 230698 3119979 ~ 3150877 (-)
LOC103025183 ppm1la,ppm1l,LOC108430727,LOC107722109,LOC107681725,LOC107701333 coding downstream 281685 3089391 ~ 3099890 (-)
LOC111194268 LOC108430728 coding downstream 295100 3084742 ~ 3086475 (-)
LOC103045647 NA coding downstream 299526 3071150 ~ 3082049 (-)
zzz3 zzz3,LOC107558175,LOC104950552 coding upstream 63659 3479968 ~ 3503822 (-)
usp33 usp33,LOC107708728,LOC107751869 coding upstream 88267 3504576 ~ 3535405 (-)
LOC103031087 dia1a,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821,LOC108268022 coding upstream 306428 3722737 ~ 3759982 (-)
LOC103031615 NA coding upstream 377019 3793328 ~ 3796794 (-)
LOC103032259 si:ch211-38m6.6,LOC108437504,LOC107656858,LOC107722537,LOC107565819,LOC107681768,LOC108267997,LOC107599859 coding upstream 558501 3974810 ~ 3990263 (-)
G138563 cope,LOC107690966,LOC107709006 non-coding downstream 181465 3194593 ~ 3200110 (-)
G138515 txndc12,LOC107690994,LOC107566463,LOC107708672 non-coding downstream 225520 3150921 ~ 3156055 (-)
G138493 aldh9a1,LOC108267615,LOC108430735,LOC107681718,LOC107593789,LOC105891333 non-coding downstream 358203 3022115 ~ 3023372 (-)
G138446 NA non-coding downstream 525757 2768999 ~ 2855818 (-)
G138650 miga1,LOC107708777,LOC107722319 non-coding upstream 124662 3540971 ~ 3568654 (-)
G138651 LOC103030773,LOC108437505,LOC108267627,LOC107558181 non-coding upstream 168875 3585184 ~ 3598597 (-)
G138657 NA non-coding upstream 182954 3599263 ~ 3599510 (-)
G138659 NA non-coding upstream 199484 3615793 ~ 3616014 (-)
G138662 NA non-coding upstream 247467 3663776 ~ 3664008 (-)
gipc2 gipc2,dnajb4,LOC108430720 other downstream 206222 3156750 ~ 3175353 (-)
LOC103025790 NA other downstream 266889 3095601 ~ 3114686 (-)
LOC103045355 LOC108430731 other downstream 318816 3050400 ~ 3062759 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other downstream 894681 2477695 ~ 2486894 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 2280082 1050532 ~ 1101493 (-)
G138708 NA other upstream 416412 3832721 ~ 3833670 (-)
LOC103047802 pcolce2a,LOC108437522,LOC108268019 other upstream 431413 3847722 ~ 3861356 (-)
LOC103034146 zgc:110366,LOC108267892,LOC108437513,LOC105007548 other upstream 914562 4330871 ~ 4338197 (-)
G139074 NA other upstream 1859797 5276106 ~ 5276468 (-)
G139105 NA other upstream 1913769 5330078 ~ 5330805 (-)

Expression


Co-expression Network