lmbr1 (lmbr1,LOC107742132,LOC106578611)


Basic Information

Item Value
gene id lmbr1
gene name lmbr1,LOC107742132,LOC106578611
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1455453 ~ 1487674 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677761.1
gtgtgagagagagagagtgactgagtgtgtgtgtgtcagacagacagaagagcATCTGCAATATGAAGAATGGAAGAAGACGAAGTGACGATCAGAGAGCAGAACTTCCACAGTCAGGTTCGAGAGTACATAATCTGTTTTCTACTGTTTGCAGTGCTGTACATCGTGTCTTACTGCATCATCACTCGCTATAAGAGGAAAACTGATGACCATGAAGATGAAGATGCTATTGTCAATAGAATTTCAATGTACTTGTGTACGTTCACGCTGGCCGTGTCTGGAGGGGCGGTTCTGCTCCTGCCGTTTTCCATAATCAGCAACGAGATCCTCCTCTCCTTTCCCAAGAACTACTACATCCAGTGGCTCAATGGATCCCTCATCCACGgtCTGTGGAATCTGGTGTCTCTCTTCTCAAATCTCTGTCTCTTTGTGCTCATGCCTTTCGCATATTTCTTCCTGGAGTCGGAGGGATTTGCCGGTTCTAAAAAGGGCATTAAGGCGCGAGTGTTGGAGACGTttgtgatgctgtttctcctcGGTCTGCTCATCCTGGGCATCGTTTGGGTGGCATCTGCCCTCATTGACAATGATGCAGCGAGCATGGAGTCTCTGTatgATCTGTGGGAGTTCTACCTGCCGTACCTGTACTCCTGCATCTCTCTGATGGGCGGTCTGCTCCTCCTCATGTGTACACCAGTGGGTTTGTCCCGGATGTTCACAGTGATGGGTCAGCTCCTGGTGAAGCCCACGATATTGGAGGATCTGGACGAGCAGATGTACTGTATTCAGCTACAGGAAGAGGCCCTGCAGCACAAGCTGAATGGTGCATCCTTCAATTCCCATTTACAGCCAAATTCCCAGCATCTCTACAAGGAGCTTGATAACGTCCGCAGCCAGAGGCACAAGCTAGagaggaagaagaaggccTCAGCTTGGGAGAAGAACCTTCTTTACCCCATCGTGATGCTGATTCTGCTCGCCGGCACGGCGATTTCGGTCTTCCTGGTGGCTCTGAACATCCTGTACCTGCTTGTGGATGAAACTGCGCTGCCGAAAGGATCAGCGGACCCAGACATTGGTAATGCGTCCCTGTCCACCTTCGGCGTCGTCCAGGCGGTGGTTGAAATCATCCTGATGATTTATCTGATGGTTTCCTCTGTGGTGGGATTCTACAGCCTCCGCATCTTCCAGGGGCTCACACCCAGACAGGACGACACCACCATGACCTCgATCATTGGATGCTGTGTGTCTATCCTGGTCTTGAGCTCTGCGTTGCCAGTCATGTCCCGAACACtcgGAATCACTCGCTTTGATTTGCTGGGAGATTTCGGACGTTTTAATTGGCTGGGAAACTTCTACATAGTCCTGTCCTACAACCTCCTGTTCGCTGTGGTGACGACGCTGTGCCTGGTGCGAAAGTTCACTTCAGCTGTGAGAGAGGAACTACTGAAAGCTCTGGGTCTGGATAAATTGAACCTGTCAAACAGCCCCACGGAGCCGGAGTCGGGAAAACTCGCCGCCAACGGACATCAGAAAACTCTCTGAGACGTGCACTCGCACTTTTCCCCACGCATATCCACAGTGTGGGTGTTTACCAGTAAAGAGAAAGGGGTGGTGGTCTTTAAATTCTGCAAATTCTGCAAAGTAAGTAAAGAAAGTGAGAAGAAGATTCCAGAAATACagcggttggacaatgaaactgaaacacctgtcatcattttagtgtgggattttaggtttcatggctaaattggaacaGC

Function

symbol description
lmbr1 Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in Laurin-Sandrow syndrome; acheiropody; hypoplastic or aplastic tibia with polydactyly; and syndactyly type 4. Orthologous to human LMBR1 (limb development membrane protein 1).

NR:

description
limb region 1 protein homolog isoform X2

GO: NA

KEGG:

id description
K25217 LMBR1; limb region 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677761.1 True 1760 mRNA 0.50 17 1455453 1487674

Neighbor

gene id symbol gene type direction distance location
shh shh,LOC108411758 coding downstream 95040 1345064 ~ 1360413 (-)
trove2 trove2 coding downstream 352646 1090237 ~ 1102807 (-)
tnn NA coding downstream 428987 991893 ~ 1026466 (-)
pappa2 NA coding downstream 704873 718023 ~ 750580 (-)
brinp2 brinp2,LOC107720848,LOC107658350,LOC107700985,LOC107562711,LOC107722070 coding downstream 1031665 286350 ~ 423788 (-)
LOC111194257 LOC108430781,LOC108267757,LOC107591375 coding upstream 4142 1491816 ~ 1497588 (-)
dcaf8 dcaf8,LOC107706361,LOC107659382,LOC107738146 coding upstream 22959 1510633 ~ 1523685 (-)
LOC111194258 NA coding upstream 51429 1539103 ~ 1546999 (-)
LOC103023075 kcnt2 coding upstream 164800 1652474 ~ 1681323 (-)
LOC103045138 NA coding upstream 208071 1695745 ~ 1700670 (-)
G138254 NA non-coding downstream 4695 1357760 ~ 1450758 (-)
G138231 NA non-coding downstream 86580 1298354 ~ 1368873 (-)
LOC111194256 NA non-coding downstream 156287 1270811 ~ 1299166 (-)
G138226 NA non-coding downstream 204516 1249712 ~ 1250937 (-)
G138209 LOC108412812 non-coding downstream 236540 1217474 ~ 1218913 (-)
G138264 NA non-coding upstream 1668 1489342 ~ 1489632 (-)
G138266 NA non-coding upstream 3254 1490928 ~ 1491686 (-)
G138253 NA non-coding upstream 20318 1507992 ~ 1509496 (-)
G138268 NA non-coding upstream 44326 1532000 ~ 1533564 (-)
G138272 cdc73 non-coding upstream 81163 1568837 ~ 1574707 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 353960 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 738130 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 990021 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 1562726 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 1607927 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 1669076 3156750 ~ 3175353 (-)
G138708 NA other upstream 2345047 3832721 ~ 3833670 (-)

Expression


Co-expression Network