LOC111194257 (LOC108430781,LOC108267757,LOC107591375)


Basic Information

Item Value
gene id LOC111194257
gene name LOC108430781,LOC108267757,LOC107591375
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1491816 ~ 1497588 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677762.1
agtcCAGCCGATCCCCCTCCAGCAGCCTCCTGATGGCGAGCAACGTGACCAACAAGACGGACCCTCGCTCCCTGAACTCGCGGGTCTTCATCGGAAACCTGAACACCATGCTGGTGACCAAGGCCGATGTGGAGGCCATCTTCAGCAAGTACGGGAAGATCGTGGGCTGCTCTGTGCACAAGGGCTACGCCTTCGTCCAGTTCGCCAACGAGAGGAACGCCCGGTCCGCGGTGGCCGGGGAGGACGGCCGGATGATCGTGGGGCAGGTGCTGGACATCAACCTGGCAGGTGAACCCAAACCTCACAGGTCGCAGACGACGAAGCGTCCAGCAGGAGATATGTACAGCAGTTCCACCTTCGAGCTGGACTATGATTTCCAAAGAGATTACTACGACAGGATGTATGCCTACCCATCCCGCGTCCCgccaccccctccccccctctcgCGGGCAGTCATCCCCTCCAAAAGGGCTCGGGTCAGCATGAGCGGAGGAAGCCGCCGGACCAAGTCCAGCTTTTCCTCGTCCTCCAAAGGCAGCCAGCGCTCCTCATCGCGAGCCATTAAAGTGGATGACCTCCAGACCATCAAGAGGGAACTGGCTCAGATCAAGCACAAGGTGGACTATCTTCTGGAAAGCTTAGATCGCATGGAGAAGGATCACAGCAAGAAGTCTGATGGTAAGGTGTTGAAGACTGAGGCAGGCGAAGCTTCTTCTCAGCAGCACTCCAGCGTTAAGAAGGAGCGAGAGCGGGAGGAGCAGGAGATCAACGACtctgaagaggaggaggaagaggagggtgacctgctggaggaggaagagGTGAAGAGTCACGGAGGAGAGAATGAAGAAGAGgaaggagaagaggaagaggagggagaGCATGAGGAAGGAGAAGACGACGGCGACAGCGTCAATGGAGATGACCCATAAACTCTCCttagataaacacacacacacactatacagaaAATCTACagacactatacacaacacacacacacacacacacacacacacacacacacacgtctggAGTAACAACACAGGTCTGCTCCTCCCAAACCCTTTTTATCAGAATTAtggttgtttattattatatattttttttaatctcataTTTTCGTTACGTAAAGAAtgtaaagacacacacacacacacacacacacttgttatGAAGCTCAGTGTAATTTTAAAGCCACACTCATTTACTCCAGACcatgttttttctttccctcttaggaataaaaaaaaaagtagtttttaatacATTCCTCATCATTCCCACACATTTTAGAAACCGGTTCATGTTTTCGGATTCagatcttttttctttatttctttctttctcgaTTGTTCCAAGTGAAGAGcaatggagtgtgtgtgagtgtgtgtgtgtctgagtaaAGACACTCCTCTAAAGAGAAGAGTAGAGTGTATTTCTGTGGACTCTGGTTATTTTAACAGTGGGTTATTTTCCTCTGGCTCTGTTATTACTGAGTGGGGGGCTGAGATCACACTTCCTCCTCCATCCTGGAAACAGTATGTATGTTAATAtttgcgtgtttttttttttttttatgtcacccTCGTTCCGGTAAGTTCTACATataaatttcaataaaaatgatGGTAAAGTAA

Function

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein C-like isoform X5

GO: NA

KEGG:

id description
K12884 HNRNPC; heterogeneous nuclear ribonucleoprotein C1/C2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677762.1 True 1640 mRNA 0.48 8 1491816 1497588

Neighbor

gene id symbol gene type direction distance location
lmbr1 lmbr1,LOC107742132,LOC106578611 coding downstream 4142 1455453 ~ 1487674 (-)
shh shh,LOC108411758 coding downstream 131403 1345064 ~ 1360413 (-)
trove2 trove2 coding downstream 389009 1090237 ~ 1102807 (-)
tnn NA coding downstream 465350 991893 ~ 1026466 (-)
pappa2 NA coding downstream 741236 718023 ~ 750580 (-)
dcaf8 dcaf8,LOC107706361,LOC107659382,LOC107738146 coding upstream 13045 1510633 ~ 1523685 (-)
LOC111194258 NA coding upstream 41515 1539103 ~ 1546999 (-)
LOC103023075 kcnt2 coding upstream 154886 1652474 ~ 1681323 (-)
LOC103045138 NA coding upstream 198157 1695745 ~ 1700670 (-)
LOC103022462 NA coding upstream 204986 1702574 ~ 1705368 (-)
G138266 NA non-coding downstream 130 1490928 ~ 1491686 (-)
G138264 NA non-coding downstream 2184 1489342 ~ 1489632 (-)
G138254 NA non-coding downstream 41058 1357760 ~ 1450758 (-)
G138231 NA non-coding downstream 122943 1298354 ~ 1368873 (-)
LOC111194256 NA non-coding downstream 192650 1270811 ~ 1299166 (-)
G138253 NA non-coding upstream 10404 1507992 ~ 1509496 (-)
G138268 NA non-coding upstream 34412 1532000 ~ 1533564 (-)
G138272 cdc73 non-coding upstream 71249 1568837 ~ 1574707 (-)
G138273 NA non-coding upstream 95830 1593418 ~ 1594042 (-)
G138290 NA non-coding upstream 140567 1638155 ~ 1692315 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 390323 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 774493 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 980107 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 1552812 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 1598013 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 1659162 3156750 ~ 3175353 (-)
G138708 NA other upstream 2335133 3832721 ~ 3833670 (-)

Expression


Co-expression Network