LOC111194258


Basic Information

Item Value
gene id LOC111194258
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1539103 ~ 1546999 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677765.1
GCCCCCATCCATTCAAAAGGACCGACACAAAGCTGCTGCATCACTTTCCTCCAGCATCGGCTCACCTGGATACACCACCTCACCTGCACACCTCAAACAACAGACATGGAGGCCAAACTGCTGGTGTTGGTTGCGTTCGCGTGTGCCGTGTCCTGCGTGAGAGCTGGGACGGTGAGCGTCAACGTGACCCTGCAAGCTCCTAACATCACCCGGAGCGGCTGCGGAACCTCCAAGATGTGCCTGACGAGCTGCGACCCAGCGACCAGCCCCTCCAGCTGCTTCTACGCCTCCACCCAGCAGAGCAACTCCTCCCTGGTGTTCGAGCTCAGCGGCGGCACCACCGGCTACGTGGCTCTCGGCCTGTCCACCAACCTGACTCAGGGAGCCtctattgtgtttgtgtgtgggaaCAGTAACGCCTCCAGCAATTCGTCTGGATTCATCTTCCTGACCGCCAGCAACTCCGCAAACGGCCTGAACCTCAACACATCTGTGAGCACTGTAAACAGTATCCAGGGTATTGTGGTAAACAACCAAACCATGAACAAGACCTACATCCAGTGTGTCTTCAGCACCTCCGTCAACCTGACCACCAACTCCACCTCCAACTCCACCAAGAGTTCACCCAACAGCTATTACGTCTCCATCTTCAGCGGAGTTATGAACGGTGACACACCAGGTTCCCCCAATACAGAGTTCAACTCCACCACACTGCTGGACCTGACCGATCCTAAAGCAAACACTGCCAACAGCACCAGCAACGCCACCACTGCCCCCAGCGCCGTCACCGTAGCGGGCAGCGACTCTCTGTTCAGCCCCGTCGCTCGCGCCCTGTCCATCCTGCTCAGCGCCGTTGGTCTTCTTCTCCTGTACTAAAGGACCAGCCTCTCAAATCCCGTCTTATCTCCAGCACATCTCTCAGGGTTAATGAGCACTGTGTACAGCAGGGTTCCTGCAGgccagcctgtgtgtgtgtgtaagagtgtgtgagagtgtgtgtgagagtgtgtgtgagtgtgagcacATGAACTGGAGACATGTTATGAAGCCGGCGCTGATTGGTCGAGCATGTTGTCCCTCCTGTCCTCCTCAGCGTGGTCTGTTTATTCCTCTGGTCTCTCAGAAAGGGCTCTGAACTCCGGCTCTTCGCTTTTACATTCTGCTGCTTTGCGTCGGCGTGGAGCGCACGCGAGTTAGTGGCGTGTGCCGACGCCTGTGGTGTATATGCTATTATTTTAAACGATTATCCGATTTCCCactagtttatatatatatatataaaaatataaatatctataatTATAATGACGTtattttacacactgttttttcacCTGTAATGTTTTTGATCAGGAAGATAATATTGCtgattaaagtttattttacataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677765.1 True 1390 mRNA 0.52 7 1539103 1546999

Neighbor

gene id symbol gene type direction distance location
dcaf8 dcaf8,LOC107706361,LOC107659382,LOC107738146 coding downstream 15418 1510633 ~ 1523685 (-)
LOC111194257 LOC108430781,LOC108267757,LOC107591375 coding downstream 41515 1491816 ~ 1497588 (-)
lmbr1 lmbr1,LOC107742132,LOC106578611 coding downstream 51429 1455453 ~ 1487674 (-)
shh shh,LOC108411758 coding downstream 178690 1345064 ~ 1360413 (-)
trove2 trove2 coding downstream 436296 1090237 ~ 1102807 (-)
LOC103023075 kcnt2 coding upstream 105475 1652474 ~ 1681323 (-)
LOC103045138 NA coding upstream 148746 1695745 ~ 1700670 (-)
LOC103022462 NA coding upstream 155575 1702574 ~ 1705368 (-)
zbtb41 zbtb41,LOC102777630 coding upstream 162325 1709324 ~ 1717429 (-)
LOC111194260 NA coding upstream 201859 1748858 ~ 1757008 (-)
G138268 NA non-coding downstream 5539 1532000 ~ 1533564 (-)
G138253 NA non-coding downstream 29607 1507992 ~ 1509496 (-)
G138266 NA non-coding downstream 47417 1490928 ~ 1491686 (-)
G138264 NA non-coding downstream 49471 1489342 ~ 1489632 (-)
G138254 NA non-coding downstream 88345 1357760 ~ 1450758 (-)
G138272 cdc73 non-coding upstream 21838 1568837 ~ 1574707 (-)
G138273 NA non-coding upstream 46419 1593418 ~ 1594042 (-)
G138290 NA non-coding upstream 91156 1638155 ~ 1692315 (-)
LOC111194190 NA non-coding upstream 99081 1646080 ~ 1646837 (-)
LOC111194191 NA non-coding upstream 101751 1648750 ~ 1649542 (-)
G138199 plk3,LOC107563563,LOC107722069,LOC107658359,LOC107726922,LOC107557223 other downstream 437610 1050532 ~ 1101493 (-)
LOC111194217 pappa2,LOC107722077,LOC107678935,LOC107726923,LOC107658303,LOC107558342 other downstream 821780 695903 ~ 717323 (-)
LOC103042176 zgc:55943,c7h1orf21,LOC103042176,LOC108430752,LOC107709356,LOC107671715,LOC107559369,LOC107593773,LOC107727521 other upstream 930696 2477695 ~ 2486894 (-)
LOC103045355 LOC108430731 other upstream 1503401 3050400 ~ 3062759 (-)
LOC103025790 NA other upstream 1548602 3095601 ~ 3114686 (-)
gipc2 gipc2,dnajb4,LOC108430720 other upstream 1609751 3156750 ~ 3175353 (-)
G138708 NA other upstream 2285722 3832721 ~ 3833670 (-)

Expression


Co-expression Network