gjd4


Basic Information

Item Value
gene id gjd4
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 2858385 ~ 2861653 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238623.3
TTGTCTGAGAACAGTTGTCGTCCTGGAAAGAGCAgtagtgagagagcgagagagaggtaAGACAGGAAGCAGCGACAGGAGCTGTGTGCAGGACACCAGACTAGGCCCGTCCAGCTAGCGTTCCCTGCTGGGATTCTGGATAAGTTTAATGGGATCAGCTTCGGGTCCACAGTAGGAACTAAATGTGATTCTGACTAACTTTACGGTGGGCTCTTTTTGGGGAGCCTTAATCTGAAGCTATGAGGAGGCCGGGGGCCTCAGAGGTCATCTTCATCGCACTCAACTACAACATCACTATTGTGGGAAAGGTATGGCTGGTCCTGATGGTCTTCTTGCGTATATTGATCTTGTTCTTTGCTGGATATCCCCTCTACCAGGATGAGCAGGACAGATTTGTGTGCAAcaccatccaacctggctgtaCCAACGTGTGTTATGATATATTTGCTCCACTGTCTCTGTTCCGCTTCTGGCTGGTCCAACTTACATTTATTAGCCTACCTTACATCATGTTTATAGTCTATGTGATGCACAAAGTAACGGCGAACCTACCAGTTCATTCTGAAGCTTCTGAGAAGATGATTCATGGGTCTGTCTACAAGATCTACAAGGAACCTTTGTGTGAGTCATCTCTGTCAAAGTCCACTGTTAAGTGTGAGGTTGGAAGGTTGTGTCGTTTCACAGGAGCCTACATCTTCCAACTTTTGCTCCGGATCCTTCTGGAAGCTGGTTTCGGGGCTGCAAATTACTACCTGTTTGGCTTCCAAATCCCCAAACGTTTCCTGTGCCAACAGAGTCCATGCACCATCATGGTGGACTGCTACATATCTAGACCCACTGAGAAAACAATCATGCTGAACTTTATGTTGGGGGCATCTGCCTTGTCTCTCCTTCTCAACTTTATTGACCTGATCTGTGCCATAAAGAGGTCAGTGAAGCAGAAGAATAGGAACAAGAATAGGATAATGGTGGAGAAGATGTATGAGGAAGAGAGGTACTTTGTATCTGGAAATGGAGGTACAAGCTGTGTCAGCCCTGGGCCTCAAGACCTGCTGAGTAGTGCAAGCTTTCGGAAGAGAATTAGCAAGAGTGCAGAAGATGGGACTTCTTTACAATTAGATGTTGAACCCCACACACCTTTACCTCGAGAAGGAACCCCTCTTGGTATCAGCCTTGGCAAACCTGGCTCTTTAAATGGGGACAGTGGTTACACAGTTCCGCATGATGGAGTGCTTGAAAGGGAAGGCAGTGAGGTGGCACTGTGTCCAGCTGAACATTTGGGTACTCCAAGGTCCATTAGGGTCAGCAAGCGCAATCGCCTCAAACCACCCCCGCCACCTCGACGGGACAGACCCGCAAGCACAGCGACACTGGACATCACAGATGCTACTGCAGTCTGTACAAGGAGAGTAGGACAATACACACTTGTGGAGTTGAACACAGGAAGTGACCAGCCACCCAGTAGTGGAGAAGGACAGGATAAGAAATCTGAATGGGTTTGAAAGTCCACAGAAAACAGAGGATTTTCCTCTCTTTTAGGGCAAGAGTGGCCTGTGCCTCCTAAAGGTggtacaatacagtacaaaaactcacacaaaaacccagaatgtgaatttttatttttttttgttgtgcagttgttttttttccaatggTTCATGCTTGTAATacagaatggaccaatagaaatgttagAAATAAtttgcaataatatatatttgcattgacTTCCTACTGACagtaaagaatgttttttttgtctttttccagTAAACTTGCcattttgattgtgttttttgtttcataAATACAATATGCTGTAATATACAGATGACTTATTACAGAGATTATTATAAGTTATTTCTATGTCAGAATGCTAATACATTAGTTTGAATTTTAGTAAGCTCTttacaaaatgacaaaatgatcGGTACAATGAAATACTAACACCTTTGAGCAAAGAAAGGCACCTACAGTGAATCTACCAAGACATGTGGCTGTAGCTCTGTGGTATTTTATCTGGGTCTGCAGTTGAATGTTAAGTCTCCTGTCATTATAATACGTTTTACGTCTGCTGGTAGACATACACATTCTGTGTTTTAACTTATCTACTTTACCTACATCAAGTAGatgtgttaatttaatttttttgttgtctaaaacaaataaagaaaaacaaaacaaa

Function

GO: NA

KEGG:

id description
K07630 GJD4; gap junction delta-4 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238623.3 True 2185 mRNA 0.43 2 2858385 2861653

Neighbor

gene id symbol gene type direction distance location
ccny ccny,LOC108431590,LOC107588043,LOC107739127,LOC107663729 coding upstream 10277 2755412 ~ 2848108 (+)
LOC107197132 NA coding upstream 295601 2370321 ~ 2562784 (+)
LOC103029986 pfkp,LOC100702375 coding upstream 571130 2218353 ~ 2287255 (+)
wdr37 wdr37,LOC107687510 coding upstream 1250356 1556917 ~ 1608029 (+)
LOC103031845 bdh1,LOC108431739,LOC107734382,LOC107683485,LOC107713828,LOC108272495,LOC107687506 coding upstream 1533537 1316051 ~ 1324848 (+)
sugct sugct,LOC107683488,LOC107588103 coding downstream 288001 3149654 ~ 3218687 (+)
cidea NA coding downstream 567814 3429467 ~ 3438917 (+)
LOC103034970 LOC108431516,LOC107552791,LOC108272015,LOC107692758,LOC106590085,LOC105028291 coding downstream 581666 3443319 ~ 3453636 (+)
fam69c fam69c coding downstream 604022 3465675 ~ 3505255 (+)
LOC103035299 cyb5a,LOC103035299,LOC108431496,LOC108272069,LOC107593110,LOC107713729,LOC107653797,LOC107692771 coding downstream 710844 3572497 ~ 3584203 (+)
G88092 NA non-coding upstream 359086 2498793 ~ 2499299 (+)
G88089 NA non-coding upstream 381849 2475926 ~ 2476536 (+)
G88086 NA non-coding upstream 384590 2467097 ~ 2473795 (+)
G88064 NA non-coding upstream 544656 2306508 ~ 2313729 (+)
G88022 NA non-coding upstream 759664 2098339 ~ 2098721 (+)
G88159 NA non-coding downstream 70897 2932550 ~ 2933084 (+)
LOC111193314 NA non-coding downstream 379068 3240721 ~ 3242426 (+)
G88162 NA non-coding downstream 524546 3386199 ~ 3417550 (+)
G88253 NA non-coding downstream 592322 3453975 ~ 3454375 (+)
G88254 NA non-coding downstream 594762 3456415 ~ 3456689 (+)
G88473 NA other downstream 1818460 4680113 ~ 4680837 (+)
G88486 NA other downstream 1935169 4796822 ~ 4806673 (+)
pard3 LOC108431315 other downstream 2050003 4911656 ~ 5463025 (+)
trnap-agg_3 NA other downstream 4381253 7242906 ~ 7242977 (+)
G88849 NA other downstream 4716957 7578610 ~ 7579960 (+)

Expression


Co-expression Network