G88253


Basic Information

Item Value
gene id G88253
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 3453975 ~ 3454375 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU118774
atttacaattcaaatgaatctagaattcaaattaatgaaatgtttcctgtaatatttgtgtatattgtgttggtgacagtaattggtgttatttattattgaatgcctgctgttgggtgcataaataaaacattgatttttcactgttatattactctgttattgttatcttagtatggaccattatgtctgctgtagcaaatttgcaacataccaaatttaccccaaatagaccatattgcctgttgttgcaaatttgcaacataccaaactttctatttatttttgtgcaaaagtgaaattaataatctcaacaatatttactatctacttaaaggtaaaacacacatgaaacattttttcatatacagctacattaattcaggcgttaaggggttaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU118774 True 401 lncRNA 0.29 1 3453975 3454375

Neighbor

gene id symbol gene type direction distance location
LOC103034970 LOC108431516,LOC107552791,LOC108272015,LOC107692758,LOC106590085,LOC105028291 coding upstream 339 3443319 ~ 3453636 (+)
cidea NA coding upstream 15058 3429467 ~ 3438917 (+)
sugct sugct,LOC107683488,LOC107588103 coding upstream 235288 3149654 ~ 3218687 (+)
gjd4 NA coding upstream 592322 2858385 ~ 2861653 (+)
ccny ccny,LOC108431590,LOC107588043,LOC107739127,LOC107663729 coding upstream 605867 2755412 ~ 2848108 (+)
fam69c fam69c coding downstream 11300 3465675 ~ 3505255 (+)
LOC103035299 cyb5a,LOC103035299,LOC108431496,LOC108272069,LOC107593110,LOC107713729,LOC107653797,LOC107692771 coding downstream 118122 3572497 ~ 3584203 (+)
ppp1r3g NA coding downstream 141420 3595795 ~ 3597381 (+)
fars2 fars2,LOC107593111,LOC107692761 coding downstream 302032 3756407 ~ 3949879 (+)
ly86 NA coding downstream 597357 4051732 ~ 4058573 (+)
G88162 NA non-coding upstream 36425 3386199 ~ 3417550 (+)
LOC111193314 NA non-coding upstream 211549 3240721 ~ 3242426 (+)
G88159 NA non-coding upstream 520891 2932550 ~ 2933084 (+)
G88092 NA non-coding upstream 954676 2498793 ~ 2499299 (+)
G88089 NA non-coding upstream 977439 2475926 ~ 2476536 (+)
G88254 NA non-coding downstream 2040 3456415 ~ 3456689 (+)
G88291 NA non-coding downstream 387508 3841883 ~ 3842217 (+)
G88292 NA non-coding downstream 395708 3850083 ~ 3851188 (+)
G88294 NA non-coding downstream 446651 3901026 ~ 3901611 (+)
G88298 NA non-coding downstream 521354 3975729 ~ 4023551 (+)
G88473 NA other downstream 1225738 4680113 ~ 4680837 (+)
G88486 NA other downstream 1342447 4796822 ~ 4806673 (+)
pard3 LOC108431315 other downstream 1457281 4911656 ~ 5463025 (+)
trnap-agg_3 NA other downstream 3788531 7242906 ~ 7242977 (+)
G88849 NA other downstream 4124235 7578610 ~ 7579960 (+)

Expression


Co-expression Network