fars2 (fars2,LOC107593111,LOC107692761)


Basic Information

Item Value
gene id fars2
gene name fars2,LOC107593111,LOC107692761
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 3756407 ~ 3949879 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673398.1
GTCCCTGATCCAGCTATGGGCTCGTACTGTAGAACTCTGCACAGATCTCTACACCTTTTAAAACCCATCACCTACACCTGGCCAGTGACCCATCTCACCTCCAGTGGGTTTATAGTAACTCAGACACTCAACCCATGCAGGAGGCAGTCCACACACCACTCCCACTTCCAGCCCCAGCATCGAATTAACGACAACTCTGTGGAAGTTCTGGGCCGCGTCTACCCTCGAGATGACATGTCTAACGTTACGGCCAAAATCCTGTCCATGGTGGGCCGTGAGCTTCACAACCAGTCCCACCACCCTCTGTGGCTCATCAAAGAACGCATCAAAGATCATTTCTACCGCTCCTACATTAGCCGCTCGGGCACCCCGCTCTTCTCCGTGCACGATAACCTCAGCCCTGTGGTCACGGTGGAGCAGAACTTCGACAGTCTACTCATCCCCGCTGATCACCCCAGCCGGAAGAAGGGTGATAACTACTACCTGAACCGCACCCACATGCTGCGCGCCCACACTTCTGCCCACCAGAAGGAGCTGGTGCGGGCTGGCCTGGACTGCTTCCTGTTGGCTGGAGACGTGTACAGGAGAGACGAGATAGACTCCAGCCACTACCCTGTGTTTCACCAAATGGAGGGAGTCCGGCTTTTCTCCAACCATGAGCTGTTTGCTCAAGTGGAGAACGGTGAGGACTTGTCTCTGTTTGAGAACGGCGGTCGCAGAACTCCACAGGAGCAGGAGAGACACACCCTGGAGGCTGTGAAGCTGGTGGAGTTCAACCTCAAACGGACGCTCACTCACCTCATCAGACACCTCTTTGGAGAAGaTCTGGAGATCCGCTGGGTGGAGTGTTACTTTCCTTTCACACATCCCTCCTTTGAAATGGAGGTGCGTTTCCAGGGCGACTGGTTGGAGGTGCTGGGCTGTGGTGTGATGGAGCAGGAGCTGGTGCACTCAGCGGGTGCTGAGAATAAGATAGGCTGGGCTTTTGGACTGGGCCTGGAGAGACTCGCCATGGTTCTGTTTGGCATCCCAGACATCCGTCTCTTCTGGAGCCAGGACGAGCGCTTCCTCAAGCAGTTCCACCTGTCCAACATCTATGACTCGGTCACCTTTCAGACCCTGAGTAAATTCCCACCACTATTCAACAATATCTCCTTCTGGCTGCCGGATGAAGGCTACACAGAGAACGACTTCTACGACTTGGTTCGCACCATTGGAGGAGATTTGGTGGAGAAGGTCACGCTGGCAGATCAGTTCACTCATCCAAaaaCAAAGAAGATGAGCCACTGTTACCAGATTGTGTACCGGCACATGGAGCGAACCCTGACCCAGGAGGAGGTGCGAGTGATTCACCAGGCCATCGAGCAGGCAGCGGAGCGTGAGCTGGGGGTCCAGGGCAGATACTGAGACCGCCAGTCCACCTCTCCCTGGCCCACAAACAGCTCAACAGATGCTGCTTGTCTCAGGTGCTACTGTCTAAATAATGCCTAGTTTTAGAGCTTCATCTTTCTCCTGGGAAAAGGCACAGATGTTCCACATGTCCGAGTCAACATGTCAATGATTTAACAGCTAGACTCTATTTTTGTAAGACACGCTTACGATCTTTCTGAACTTTGCTGTCAACCGGATTCCGTGTGCAGTCTTCTgatcaaaaagcaaaaaaataataaataaatccagccggcctgcactcacacactgTTCTCAGCCTCTGACCTTGAACCGCTCCCCCAGGTCATCCAGCCCACATCGCTCACATGCTGTACAAGTGCAGCTTTCTTAAATTCATGTTATCCAGCTGCCTGCAGCAACCTTTCATCCAGAGCACTCAGAGGCTGAACTTAAATACCTCCATCACATCAGCGCGTCGCCCGGAGGGAGCGGCCTTTGATTTAATACAAACGTGGTCCGGCCCGTTTACTCCCGTGGATTCAGCCCAACAATGGAGACTAATGGAAAAAGGGACAGTGAGGGTGCTTGCTCTGCACTCGTTTTTTCTGCTTTGCATTTTTCTAACGGCTGTTTGAGGTGGTGAGTAATGACATTGCTTTCAGGAAGCTAGTCAGATTATTAACTGCTCGGTGAATagttgaggaaaacagcaatAAACAGAAAGCTCTTGTTTATTAAGGTCCTGTAACGTGTGTTTTGTTACTGTAAGAATAAAGTAAAGAATTGGATAAA

Function

symbol description
fars2 Predicted to enable phenylalanine-tRNA ligase activity. Predicted to be involved in phenylalanyl-tRNA aminoacylation. Predicted to act upstream of or within tRNA aminoacylation and translation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 14 and hereditary spastic paraplegia 77. Orthologous to human FARS2 (phenylalanyl-tRNA synthetase 2, mitochondrial).

NR:

description
phenylalanine--tRNA ligase, mitochondrial-like isoform X2

GO:

id name namespace
GO:0006432 phenylalanyl-tRNA aminoacylation biological_process
GO:0008033 tRNA processing biological_process
GO:0005737 cytoplasm cellular_component
GO:0000049 tRNA binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0004826 phenylalanine-tRNA ligase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01889 FARSA, pheS; phenylalanyl-tRNA synthetase alpha chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673398.1 True 2184 mRNA 0.51 6 3756407 3949879

Neighbor

gene id symbol gene type direction distance location
ppp1r3g NA coding upstream 159026 3595795 ~ 3597381 (+)
LOC103035299 cyb5a,LOC103035299,LOC108431496,LOC108272069,LOC107593110,LOC107713729,LOC107653797,LOC107692771 coding upstream 172204 3572497 ~ 3584203 (+)
fam69c fam69c coding upstream 251152 3465675 ~ 3505255 (+)
LOC103034970 LOC108431516,LOC107552791,LOC108272015,LOC107692758,LOC106590085,LOC105028291 coding upstream 302771 3443319 ~ 3453636 (+)
cidea NA coding upstream 317490 3429467 ~ 3438917 (+)
ly86 NA coding downstream 101853 4051732 ~ 4058573 (+)
rreb1 rreb1b coding downstream 127047 4076926 ~ 4155395 (+)
LOC103038427 snx16,LOC103038427,LOC108431374 coding downstream 805979 4755858 ~ 4777076 (+)
wwp1 wwp1 coding downstream 877565 4827444 ~ 4876837 (+)
cul2 cul2 coding downstream 939395 4889274 ~ 4909032 (+)
G88254 NA non-coding upstream 299718 3456415 ~ 3456689 (+)
G88253 NA non-coding upstream 302032 3453975 ~ 3454375 (+)
G88162 NA non-coding upstream 338857 3386199 ~ 3417550 (+)
LOC111193314 NA non-coding upstream 513981 3240721 ~ 3242426 (+)
G88159 NA non-coding upstream 823323 2932550 ~ 2933084 (+)
G88298 NA non-coding downstream 25850 3975729 ~ 4023551 (+)
G88305 NA non-coding downstream 50548 4000427 ~ 4001895 (+)
LOC111193316 NA non-coding downstream 209671 4159550 ~ 4173459 (+)
G88327 NA non-coding downstream 247448 4197327 ~ 4199144 (+)
G88344 NA non-coding downstream 502755 4452634 ~ 4453868 (+)
G88473 NA other downstream 730234 4680113 ~ 4680837 (+)
G88486 NA other downstream 846943 4796822 ~ 4806673 (+)
pard3 LOC108431315 other downstream 961777 4911656 ~ 5463025 (+)
trnap-agg_3 NA other downstream 3293027 7242906 ~ 7242977 (+)
G88849 NA other downstream 3628731 7578610 ~ 7579960 (+)

Expression


Co-expression Network