wwp1 (wwp1)


Basic Information

Item Value
gene id wwp1
gene name wwp1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 4827444 ~ 4876837 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673411.1
aggagagagagagagaggagagagagagagagatggtcagaccaatgactgtatagCTCTGCCTGTCCAGCTTTGgagaacagacacacacactgctacagaAGCAGTAGCAGAAACAGCTCAGCAGGAAAACACACTGACTGCGACCTCTCCGCTGAGAGGAGGAGGGCGACGGACTGTTGGTAACCATGGGCCACGGTGTCGGCTGAGGATCTGGAGGGCTTTGCACACACCTATCGCTTCCACCTCTGTATATGACATGGCCACGGCCTCGTCCAGAACAGATTGTAGCAATAACCACGGAAGGACGTCGCAGCTACATGCCATTGTTTCATGTGCCAAACTCAAGAGGAAGAAGACTTTGTTTGGGACGGCCATTTATGTGGAGGTGACAGCGGAGGGTGAGAGCAAGAAGACGGCCAAATCCCATAGCTCCTCCAGTCCCAAATGGGAAGAGCGGCTCACCTTGAAtgtaacaccacacacacagttggATTTTAAAGTATGGAGCCATCACACTCTAAAGGCAGACACACTGCTTGGGAAAGCCACTCTAGACCTGCGCCAAGCTCTGGAGCAACACGACAGGAAACTTGAGAATGTAAAGGAGGTGCTGAAGCTAACTCTGGAAAATAAGAACGGTGTGGTGACTTCTGGAGAGCTCACTGTCATCTTAGACGGCTTCACTGTTGAACCGGATTCTTTGCATAATGGTAATGCCACCACTACAACAACCAaagttCAGCAGAATGGAGATGCCATTCATGAGAATGGGGAGGATGGTGCCACCAGGGCCCAGAGCAGCTCAGTGAATGGCACAAACGGAGTTGAAAGTGAAGCACCATCCACCTCTTCTGGCAACAGTGAGGGCAGCTCTGTTCCTATTGTAAATGGTGAAGGAGAGCCCACACCTACACATCAGATTGCCAGCCCAAAGGCAACGTCCATCCCGAACCCTGCAGACAGGGACTTAGACAGTACGACTGTTAATGGGGAGAATTCTGCTGCTGCATCCACAGTGGAGCAGGTGCCTCCCCCTGCTGGTGGGAGTGAGGAAGGCAGTGAATCTGCAGCTTCATCATCTCCAAGACAGCCTGCTGCTCCTTCCAACACGCAGCCCACTAGTGCCGCTACCGCCGCTgcctcctcttcatcctcttcctcGTCTACAGCTTGCCAGGcggctgctgctgttgctgctgctacATCCTCTAGCTCTACAGCAGAGGCTGCAACTGGCAACAGCACAGCCACGGATGGAGCCAAACCGCGCCAGCAAGCACCTAGCTCTGGCACTGCAGACCCTTTGCCTCCTGGGTGGGAACAGAGGAAGGACCCACATGGCCGAACTTACTATGTCGATCACAATACGAGAACCACAACATGGGAAAGACCACAGCCCCTGCCACCAGGGTGGGAGAGGCGAGTGGACGACAGAGGCCGAATCTACTACGTGGACCACAACACACGGACCACTACGTGGCAGAGGCCCACCATGGAGTCAGTGCGCAACTTTGAGCAGTGGCAGTCTCAGCGCAGCCAGCTACAGGGAGCTATGCACCAGTTTAACCAGAGATACCTCTACTCGGCTTCAATGATGTCGGCAGAAAATGACCCTCTGGGCCCACTACCTCCTGGTTGggAGCGACGAGTGGATTCTAATGATAGGGTGTATTTTGTCAATCACAATACCAAGACTACCCAGTGGGAAGATCCACGCACACAAGGGCTGCAGAATGAGGACCCTCTACCCGAAGGCTGGGAGATCCGCTATACACGAGAAGGGGTTCGATACTTTGTGGATCACAACACCCGCACCACCACATTCAGTGACCCAAGGACTGGCAAGTCCTCTGTCACCAAAGGGCCTCAGATAGCATATGAGCGTAGCTTCCGTTGGAAACTGGCTCACTTTCGCTACTTGTGTCAGTCCAACGCACTTTCCAGCcatgttaaaatcacagtgtctAGACAGACGTTGTTCGAAGACTCTTTCCAGCAAATAATGGCTCTGAAGCCTTATGACCTTAGGAGAAGGCTTTACGTCATTTTCCGAGGGGAGGAGGGTCTGGACTATGGAGGCCTTGCCAGggAATGGTTTTTCCTTCTCTCACATGAGGTCTTGAACCCCATGTACTGTCTGTTTGAGTACGCCGGCAAAAGCAACTACTGTCTGCAGATAAATCCCGCCTCCACCATCAACCCAGACCACCTGTCCTACTTCTGCTTCATTGGCCGCTTCATCGCCATGGCACTCTTCCACGGAAAGTTTATCGACACAGGCTTCTCCCTGCCTTTCTACAAGCGCATGCTCAACAAGAAGCTAATCCTGAAGGACTTGGAGTCAATTGATCCAGAGTTCTACAACTCTCTGATCTGGATCAGGGACAACAATATTGAAGAGTGCAGTTTAGAAATGTATTTCTCTGTTGACATGGAAATCCTGGGCAAAATCACCTCCCACGACCTGAAACCAGACGGGGCGAACATTCTGGTGACAGAGGAGAACAAAGAGGAGTATATCGGGCTGATGGCAGAATGGCGGTTTTCCCGAGGTGTAGAGGGACAGACCAAAGCGTTTCTGGATGGCTTCAATGAGGTGGTTCCCCTGCAGTGGCTGCAGTATTTCGATGAGAAGGAGTTGGAGGTAATGCTTTGCGGGATGCAGGAGGTGGATCTGCAGGACTGGCAGAGGAACACTGTGTATCGCCACTACACCAGAAACAGCAAGCAGATCATGTGGTTCTGGCAGTTTGTGAAAGAGGTGGACAATGAGGTTCGTCTGCGACTGCTGCAGTTTGTCACCGGCACCTGCAGGCTGCCTCTGGGGGGCTTTGCTGAGCTCATGGggAGTAACGGACCTCAGAAATTCTGCATCGAGAAGGTTGGCAAGGACACTTGGCTTCCTCGCAGTCATACATGCTTCAATCGACTGGACTTGCCCCCCTATAAAAGCTTTGAACAGTTGAAAGAGAAGCTGCTTTTTGCAATTGAGGAAACAGAAGGATTTGGCCAAGAGTAGAGAGCAGTTCCTCTCTACAGCCGTGCCCAGCCAAGTCCAtgagggggagaaaaaaaaagattacaaaaaaagtaaaattgcaCAGATAACTACCAATGTACATAAgctattttgtcattttaaaccaaatcttaatcttaaaccTCATTTAGCAATCTCCATGACATTATTCCCCATGATTATGCAAGCATTTCAGCTTTTTCTTATCTTTTAAAAGCAGAAATCTAAAAACAGTAATAGTCTTTTCCTTTTGGTTGTTTTTAAAGGAgattgacaaaataaaaaaatcaagagaggattttataattaaaacatacCTACAGCTCTAGTTTTATAGAGCTCTTAAAGGATGATTGTAGTGTTTGGTCTGGTGCCTgggttttcttcttcttttatttattttttttttcctttttttttgtttttgtttttttttctttttctttttttagatcTTTAGTTGTGATCGTGCTGCACTTGCATGGCTGTCTCCAGAGAAGATCAAACCCCCACCCCTCTCCCCTCCCCAGACGCACAAACACACCATGCAGCAAATCCATTACTCCGTTTGGTTTGCATATCATCCAAAAGACCTGGGTTCAGTCTGACAGTATTGCTGTTTGTCACTTTAGACCAGAAGTATTTTTGTTCCTCTACTTAGCTGCTGCATTATACACAGGTTATCTACTTTAGGTTCTCAGTGTCCTTGTTCAGAAAATGAATTCACAGGGAAAGGCTAGCTCagtcttactttctctcttacCATATTTGCTTAACATATATATGCCTGTCAAGTTATATTCAAGGCTACGCAGGTTCTCTTTGGTTTAGACTACTGGAAAAATAGATTGTCTTAAACTTCAGACTAGCTGGCAAGCAGAAGGAAGCATTCAGCATCATTTTATATGGCATATCAGAGTTAAGTCTTTAGAATTACTTTACATCTTCTCTTCACTTCACTAGACTTTTCTAGAGTAGATCTGAAGACTTTAGGTTAAAGTGTCGGTTTGGATGCTCACAAAATAAAGAGGCTCCCAGTGTAGTGATACAAAACATTACCTGTGTCCAAAACTGTGCCCTATTCACTCTATAGTGCACTACTCTGAAATTCTGACATTCTGAAGTGGTATTCTAAAACAGTGGACCACAAAAATCCCAAACCCGAAAATATAACACTATAATAAAtgcactataatatatattgtaaaaaatagtCTACCCTCCTACCAGCTACTAATTACCTGTAATTCACTTTGTTGTTTGGTTTAAAGATTTGCATGAAACATAGTTAAGGAAAACCGACAATTAGATTGTTATATATGCGACGGCAGATTGTCACATACTGAGCTCGTACTCACTCAGCTAGGTAGATGTGGTGTTCATTCAACACTCTATTATATTATTCTCCTGTAATAGTGCTTTGGAAATGGTGTTTTGGATTTTTGCATGTAGAGGAAAGGGAATAGGGTACATAGGGTTTTGGACACAGCtagtaaataaa

Function

symbol description
wwp1 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in positive regulation of protein catabolic process; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein polyubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: NEDD4-like E3 ubiquitin-protein ligase WWP1

GO: NA

KEGG:

id description
K05633 WWP1, AIP5; NEDD4-like E3 ubiquitin-protein ligase WWP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673411.1 True 4523 mRNA 0.47 25 4827444 4876837

Neighbor

gene id symbol gene type direction distance location
LOC103038427 snx16,LOC103038427,LOC108431374 coding upstream 50368 4755858 ~ 4777076 (+)
rreb1 rreb1b coding upstream 672049 4076926 ~ 4155395 (+)
ly86 NA coding upstream 768871 4051732 ~ 4058573 (+)
fars2 fars2,LOC107593111,LOC107692761 coding upstream 877565 3756407 ~ 3949879 (+)
ppp1r3g NA coding upstream 1230063 3595795 ~ 3597381 (+)
cul2 cul2 coding downstream 12437 4889274 ~ 4909032 (+)
nrp1 nrp1,LOC107565689,LOC106578544 coding downstream 851681 5728518 ~ 5821874 (+)
itgb1 itgb1,itgb1a,LOC107566918,LOC107565694,LOC107653806 coding downstream 954996 5831833 ~ 5874724 (+)
LOC103042448 NA coding downstream 998867 5875704 ~ 5926455 (+)
LOC103043891 LOC103043891,LOC108431261,LOC107655697,LOC107653805,LOC107566917,LOC107714010,LOC108271824 coding downstream 1052987 5929824 ~ 5988498 (+)
G88459 NA non-coding upstream 253816 4573211 ~ 4573628 (+)
G88454 NA non-coding upstream 299120 4528099 ~ 4528324 (+)
G88344 NA non-coding upstream 373576 4452634 ~ 4453868 (+)
G88327 NA non-coding upstream 628300 4197327 ~ 4199144 (+)
LOC111193316 NA non-coding upstream 653985 4159550 ~ 4173459 (+)
LOC111193318 NA non-coding downstream 163018 5039855 ~ 5041010 (+)
G88532 NA non-coding downstream 416781 5293618 ~ 5296539 (+)
G88538 NA non-coding downstream 760183 5637020 ~ 5637262 (+)
G88541 NA non-coding downstream 968774 5845611 ~ 5902704 (+)
LOC111193319 piezo2,LOC108431241,LOC108271803,LOC107734312 non-coding downstream 1130258 6007095 ~ 6015307 (+)
G88486 NA other upstream 20771 4796822 ~ 4806673 (+)
G88473 NA other upstream 146607 4680113 ~ 4680837 (+)
pard3 LOC108431315 other downstream 34819 4911656 ~ 5463025 (+)
trnap-agg_3 NA other downstream 2366069 7242906 ~ 7242977 (+)
G88849 NA other downstream 2701773 7578610 ~ 7579960 (+)
LOC111193322 NA other downstream 3200260 8077097 ~ 8080028 (+)
sumo1 NA other downstream 3365482 8242319 ~ 8249434 (+)

Expression


Co-expression Network