rreb1 (rreb1b)


Basic Information

Item Value
gene id rreb1
gene name rreb1b
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 4076926 ~ 4155395 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602815.2
actagtttGGAGTGGGGGAGGGAggaggcagcagcagcttcaggcaggcaggcaggctggTTGATGAGCAGCTGGGGAGGGGTCTGCAGTATCATGCATGGGCTCACGACTCGTGGAAATTTGAGAGGCGGTTCTGCACCCAGCGAGGgagggcagcagcagcagaaaaaaagtcagagaaagtagtaaaagtagttgATTTGGAGTTGTGAACTGGTTTGTGCGACGAACATCGATCGACACACGAGTATTACAACAaccaacaccacagcagcagcagcagccaaccaacaaccaaccgcCTGTTGCTGGTGCtgctccttttttcttttttttttttcctcagcaagcttcctccttctctttttttctcccagGCGTATCCCTGTGGTCCTCATTTGACTGGGAAGCCCTGGCGAAGGTGAAAACAATGGATGGCAGGATGGGAACTTCTTCTTCAGAGTTGTTGGGGAGCTCTAACGAAATGTGTGCTAACTTTTGGTGCTGAGAGATGCTTGTCGCGCTTGGCCACCACACAGCCTGAAGAGGAAGAtcagaacaagaagaagaacacACACAAGCGTCCCCTCTtggagacgagagagagagagagagagacacacacacgcacgcacacacacgtgATGCGCCACAGCAGACTTAGAGTTAGTTAGTAGCTAGCAACTGATCACGgttggagaagagagagagagagagagagacatagaaaaagagaggaaagataGAGAAGAGATACAACACACAACGCTTTGGGGaagggaggagaaaaaaagaacacgaagaagaagaagactaaAAACAAGGGCTTAACAAGGAAGGACTTTCCTCTCCTCCATATGACCCACTctatcatcctcctcctcctcctcctcctcctcctcctcctgctgctgtagAAGAGGAAGGAATCCAGCCGAGAGGAGGAGAAAGCAGCAGCAAGTTGACGGACGGACGAACGAACTTTGCACATCTTCAGGAAACGCCATTTTGGACTTCACTCCTCTCTGGAACAACTTTTGctgcttcttttctttctttcctccccCCCCCTTTTCCTCCTCCGTCTCCTCCTCCAACTCCTCAACAACTCCATCACCCCCTCCTCCTTCATCACACCTCCTCTACTActacaaccaccaccaccaccaccatcatcatcatgtcTCGGCGAAAGCAGCCCAACCCCAACAAAGTGAAGCAGCTGATGGAGagtttggtggaggagaaaagacCCTCAGAGGTGCTCAGCTCTTCACTTAGCACCAAGGAGACCaagcagcagcagaaggagGAGACAGAGAAAGCCATCCTCACACCGAcacaagagaaacacacagAGAGTCCAAGAGATTTGGAGGACAGAATGTCAGAGAGGATGGATGGACAGTTCACAGCAGAGGATGGGATAAATGGAGTGGATGGAGAGGACCTGTCGTCCATCAACTCAATGATGAGCACTGTGATGAAAGCAACTCTGAACGGAGGAGTGCAGACAGCCTCCAGCACCCCCACCAAGACCCCTAACAAGAGCCCGGGCGCCAGCCGCAATGGCAGAAAGAGCCAGGAAACCAAAGATAGCTCTCCCCTTGTCTGCCCACTGTGTGACAAAAGCTGTCAAAGCCAGCACCAGCTTACAATGCACATTCgccagCATAACTCTGATGCTGGAGCAGCAGATCACTCTTGCAGCATCTGTGGAAAGTGCCTGAGCTCAGCCAGCTCACTGGACCGTCACATGCTGGTGCACAGCGGGGAGAGGCCCTACAAATGCAGAGTGTGTAGCCAGACTTTCACCACCAACGGCAACATGCACAGGCACATGAAGATCCACGATAAAGACCCAGCCATCCCCGTTCCTACCAGCCCTCAATCACCAATGAAACGGAGACGCTCCTCCACAGCCAAGAGGAAGCTCAGCCATGATGATGAAGTAGATCGAACTGATGAGCCTCCCAGCAAAAAGGTTGCAGAGGATAATGGAGTGGATGAGCCGGCACCTACTAAAGTGCAGGAGGAACCGCTACCATGCCCTATCTGCTTTAAAACCCTCAGCTCTAAACATGACCTGGAGGTCCATATGGAAAGCCATCCTGATGCTACTCTCAGGTGTGAGCTCTGTTGCATTTCATTTCGGACGCATCGAGGTTTGCTGCGTCACAATGCAGCAATCCACAAACAGCTGCCAACCGACCCTAATGGAGAACCATTCATTCAGAACAACCCCTCCATTCCTCTTGGCTTTAATGACCTGGCTTTTATTGACTTTTCCTGCCACAAGTTCCCTCGCATTGCCCAGATTTGGTGTGAAACCAACCTACGTCGCTGCACCAGCAAGTTTCATCGCTTTGTATGTGAAACCTGTGACAAGGCTTTCCCTCTGCGTTCAGCTCTAGACCTGCACAAGTCCACTCATGACACTTCTTCTTCCGAAGGCCCTAAAGAGTCTGTTACTCCTCAGCCCCCCAGTGTCAAGACCTCTGTGTCtgataaaagtaattttatggATTCTCTGGGTTTGCAACACATCTCTCAGGTCAAACCTGCGCCGTCCGAAGAGGATGCCATGCAGGCAGCGTTGGACAGTATCAGAGTCATCCATGTGGATCCGTCATCGACCCAACAGGAGGTCGGCTTCCTTGGAGGCCTTGGCCTTTCCCTGGTGGATCCGACCTCTCTCCGGGGCCTGCCTCAGCAGGAGGCCCTTAAACTCCTGTCCTTACAGCCTTTCCAGACTGGTTTTCTTGTCCAGCCGGATGGCGGGATGGTGGTAAAGCCGGTGAGCGAGACCGGGATGGAACTGGCCGACATACAGCAGATTCTCAAAGTGGCTTCTGCCGCCCCAAAGCAGATCAGCCTCCCACCGTTGTCCAAGGCACCGTGCAGCGCATTGCAGTCCGGCTATAAGCAGATGCCCCCACTGAAACCAAAGCCCCTGGTGGCTCCCAGGACCAACATGGCAGCCTCCACCCCTCCTCCTCTTGTGAGCACCCAGCAGGCGTCACTAGGCTGCATAAGCCCCAGCTTACCACCTCCTGCTGCCCATCCCCTGAAAGCTGGCAAAGAACTGTCTCCAGcttcctcctcttcatcatcatcatcgtcatcatcttGCAACCAGGGTTCGATGGAAAGAATGCAAATGGAGGCAGAGTTCATGGGTGATGCCCAAACCCCTATGGACATGGATGAGCAGCAGATCAAGCAGGAAGATGAAAAGACAGGACAGGAAACATCTGGAAAGAAGGGACCAGCTCGCAAAGGCTCTTATCCGTGCCGCCTTTGCAACCAGGTGTTTGCGTATTCCGGCGTACTGCAGGCACACATGCGGTACCACCAGGGCGTCATGCCCCACCAGTGCAATATCTGTGACTACGTTGCTCCAGACAAGGCCACGTTGATCCGTCATCTGCGTACGCACAGTGGCGAGCGGCCTTACGTCTGCCGAGTCTGCCATTACCCATTCACCGTTAAAGCCAACTGTGAGCGCCACCTTCGCAAGAAACACATGAAGAACACTCGAAAAGAGATCGAGAAAAACATCAAATATGTTACGGCAACTTCCACGCCAGATGCTTTGGATCAAGCCAGCTCAGCTGACGCCACCTGCCATTTTTGCGGCGAGGACCTGAAGACCTATCGAGCTCTGCAGATCCATCTGCGTACTCACAACGGTTTCCAGCGAAAGCCATTTGAGTGCAAACGCTGTGGGGCAGCCTTCCTGGCTAAGCGCAACTGTATCCACCACCTGCTGAAACAACACCCTGAAATCCAAGAGCATGATATCAAGAATCACATAGCCATTTCTCCTTCTTCTGAGGCCAGTCCTAGCCCTTCTCCTGTCAATGGATTGTCACCAAGTGCTCCTCTGAATCCCATTAAAGTAGAGGATCAGAGCTACTACACCACAGACCCCGAGCAACCACTGGACTTCTCCAAAAAAGGCAGAGGACCCAGCCACACTGGCAGCACAAGTAGTTCTCCTGTGATTAAGATGGAGGCCATATCTTACGACAGTTCCATGGAGCCCATTGATCTCTCCATTCCCAAAAATCCAGAGAAGAAGCTGAAGGTGGACCAATCCAGGCTGCAAATGGAAGTTAAAAAGGAGCAGACCTACTTCAATGCAAAGGATCTTACTCTTGCCCAGAGTCTTCAGGCAGATAGTAGACCCATTGATGAGAAGCCTCAGCAGCTCGGTTGTTACCAAGTCCCAGTAGCCTTGTCCACTCTCAGTGCAGCCAGCACAACAGGTCGAGCCTTGCGGCTGCTGAAGCCCCTTCTACCCAAGCCTACAATTGCTGGTGTGAAGGAGCTGCCTCCATTAGCCTCCATCGCTCAGATCATCTCCTCTGTCTCTGGTGCTCCTGAGCTCCTAAAAGCAGAGAAACCTGTTAATAGCTGTCCACCAGGTCCTGATCCATCCTTTAAGCAGGAGGTCATAGACTCCCCAGCAGAGGAGCTTTCCGTAGAGGGCACCAAGAAGGGGTGCAAGAAAAGGCCAGTCATCAACACAGCGAGGGAGAAGCCTACACTGAACAACATCACAGACACCAGTATTGACTTGGAGTCCAGCGGAGAGTTTGCTAGCGTAGAGAAGATGCTGGCCACCACCAATGCCAATAAGTTTAGCACGTACCTGCAGAGCAGTACGATTGAGgttgaagaaaaagaagaagatttgTGTGCGACTGGCAGGAGAGACGCTAAAGATGAAAAACATCTGTCAGCCAAGCACAGCCCACAGTCCAGAGGGAAGAAGAATGCATACTCTAACTCCGTGCAGAAGATGACCTGCCCGTTCTGCCCCAGAGTATTCCCCTGGGCGAGCTCTCTCCAGCGCCACATGCTGACACACACCGGTCAGAAGCCATACCCCTGCCCTCAGTGTGAAGCCCTATTCTCTACAAAGTCTAACTGTGAGCGCCACCTGTTGCGCAAACATGGCGTATCCAACAGAATCCTCCGGCAAAATGGTGCCATACCAAAACCCAAGGAGATGGACGGCTCGCCAGAGGACGGATCACAAGAGAGTGCAGagAGCATGTCTGAGAGTGGAGATGCAATGGATCTGACAAGTTCTGAGTCTGAAAAGCCGACTGCATCTGATGCTGAGAAACCCTCCCCCGCCAAGCCTACAGAGGCAGCTGTAGTAGTAAAGCCTGTTCTCCACCAGATGGAGGCAGATCATCAtctggaggagagaaagagcacaGAGAATGATGAGGATTCCCACAGCAATAAGAGCCTGGACCTGAACTTCGCCACCAAGCTGATCGACTTTACGTTCTCTGAAGGTGAACAGCAGCGGTCCTCTCCTGCCGCGGACACAGAACAGCACGAGcgaacaccaccaccaccaccaccacagcagGAGGAGTCCAACAAGCTGACCTGCAAGAGCTGCAACAAGAGCTTCCGATACGCCACCACTCTCGCCAGACACGAAAAGGTCCACCAGCTGGAGAGTCTGGCTAGTGTACCCACTGTGCCTCCCAAACCCGAGGAGAGCGCTGAGGTAGCTGAGCCTGTTGAGCCTAAGAAAGAGGTGGTGGATGAGGAACTGGAGAAAGAGGAGCAGAAGGAGGTTACTGCAGAGAGTGAAGGAGCAGGCAGTGCAATAGACAGCGGCTCTGAGGAGGAGAGGAGCGACGACGAGGGAGGAGCAGCGGAACCAAAGACTTGTGACGGAGAAGCTGTAACTACCAGAGGCAAATctgagaagaggaagaagatctgcagtgtgtgtaacaagcgCTTCTGGAGCCTTCAGGACCTGACCAGGCACATGCGCTCTCACACTGGTGAGCGGCCGTACAAGTGTCAAACCTGCGCACGCACGTTCACCCTGAAGCACAGCCTGGTCCGACACCAGCGTGTTCACCAGAAGCCCAGAGGAGTGGACGGAGAGGGCTCGGCGTGTGAGATGATGGGCAGAGGCGGGGACGAGGAGGCGTTCAGCGGCCGCTCAGCCAGCGAGGGAGAATACACCCCCACCAGCACCAACCCGCCCTCTGATAACGAGAGCGAAGGCACAGAACCAGCTAAAGAGGGTCCATGCTTACAGGAGAAGAGCAGTGAGTCTAAAGATCCAGAGGGACTGGAGAAGGGACCTGAAGAGGAACAAGCAGAATCTAATAAACCAGCAGCAGAGAACCTCAAATCCAAAGAAGCTCCATCAGAGGAGCAGCCTGCAAACACTGTCACATCCCTGGAGCAGCCAGCAGAGTTCCTCCAAGGCCTGCTGGAGATCCACGCCAAGCCCGGCATCGAGAGCATCCTCACCAACAGTGAGCCCACTCTGCTGGGGGTGGAGTGAATAAGACCCTCACTCCTCTTTTCTCTAGTACTTTCTGGCAGGAATGCATCACACTGCACTCCAGAGGCTGTGCCATACTATATATAAGAACATTTGTAATTacaaaacttttctttttttaaaaatgagaaacaaaGACGAACTTTTCCAAGTGCCTTGCTACTTTTTTTGCTATATCTTTATCTACTACCAGATGATCTAGTTGATTTTTAGAGTATTTTATAAagatgatttttctttttttttggaatctTTGAAAGAAACTGCATTAATAGCAATAAATAAACCATTTAGTACAACAATTTGTATGATTTAAGTGACTGAACATAACAAGAAGAATGGTTCTACCGAAACCAGGTTTATATGGTTTTAGACCAGCAGAGGCAGAAGACATATGGCTGCTGAGACCACAGTGTAGTGTcgaggcttgtgtgtgtgagtgcttgTGTGAGCATATAACTGGAATACGTTAGCGTTAGCCTTCTCGTCAAAGGGCTGTTTCACGGACTCACTTGCACCCTGTAGTTATTTTTCCAATGATAGAAAGGTCTCCAGAGTATCGCCAGAGTATCGGAAACAGTAAAGAACTGTGTTCTACCTGAAAATGAGGGCACAAGGCTTCATTAAGTTCTGTGGGCAGCCCCCAGAGTGGTGTGCAGtttcattatattaaatatatgggCAATATTTGCCTGAAATATCATGAATTTCTCAGTTACACTGACCATGTCAGTTGTTCTGTTGGAAGAAAGTGAAGGAcccgagttttttttttttttttttactaagagggaattgcagtgtttttgttttagtttttttatatctaaaGGGCTTAAGATTCGCTTTCCCTCTAAACCAGCATCACAAACTTACAAACCCCAGACCCACAAGAACAGAGCTAATTTATCGGAcagtaatgatgatgataataataggGTCCTGTGTCCAGGTTTAATGTCTTCCAACCTACTTCAAGCCTTACTAGTGtttctacatatatatacatatatagtattTACATAGGCCTCCTccaggcctgtagcctgttggGCGAACACTAGTCTACTGCTCTACCAGTCTGTGTTTTCTTCCTCCATTTTGACGTGTACTTGAAATCTGTCACCCTGCTGCCTCCTCTCTTCGGATATGGCGCTAGTTTTTGCGGGTCCATCATCTTCACAAGCTCCTCCCCCCGAGAAGGATCTCTAGACGTCAATCACATTAGCGTAAGCAACATTTCTGGTGTTgggtattttattattgctattgtatattttttacttttctttttttttccaattttgtgAACCTCAGACTCAAACAAAGCAAACCTCAAAAGGCGCGGAAAAAAGACTTGAAACGGAGGTGGACTGTTATGATGGACGCTTTTCACGTCAGTTTTCCAGACTAATAGTAAACTGGACGACTGGGTGTTTCCCCCTGGGCACAGTCAGCGCTGGCGTGACAGGAGAATAATGGATAGTGTGACCTTTGTGCAGAAAGAAACGGACAGAAACGGAGTATTACCAAGCGAGGCTTCCTTGGATAATTGAATAAGCAACAGGGAAACGAGTAAAGGGGTGGACTAGCTCCCCTCCAGTTTTTCCCTGACTCTGCTTCTCAGGCACAAGGCTATTGAAAGGACTTgtattgacaatattttttacaaaatgcaATCGCTTTCTCAAtctgtataatattatattactgGGACATTACTGCTTCCCCTAATGCCTTTTTCTGTGTATTGGGGTGTGTATTGAGCGAGTGTGTtgcatatgtgtgtatgtgtgtatatatatgcatgcacatgGGTGTGtggatggatgtgtgtgtgtgtgtgtcaggattCTTGGTAAGAATGCTGCACACAGACcgactgttttaaatgtatttattgtagccCAGAAGTGAAGAAGTAAAACGTGGAGAAGCCATGTATTATTAACACAATTATGCTGCAGAGAGAAATGATTTAGATTCAGtacatagagagagacagagagcggcCCGGCCTAGAATCGGGCCTATCCTAGCAATAATCACTATTGATCCAAAAGCTTTATGTAGAcgtttgtatgtgttttatagactgtgtggattttttttttctttttttttgatattATTATCAGTTTGGCTGAGAGATAAGagagttctgttttttttctgtctttgatCGATTGATTGATGTATAATGCATATAAAACTGTGAAATTTGATATTCTGCTATGGGTGAATCTTTAGGGTAGTTTTTTGCATGTTAACCTTTTTATGTTGTTCATTTATGGGTGTTTTTCCTGCCCCCCCCTCCCACACTGTCTTGCTCTCAGGGTTTTTACAAAATACTTACTGAAAAATTCAATTTTTTCCTGAGTTGCAAAAAAATCCCCCCCTCCAACTTttgatttcctttttattgTTGAACAAGTCGATCTGTCAATCACTACTTTTAGCACTTGACTGTGAATTCAAACCAGTGGGCAGGATTTGCTGAATCCACACAATCCCACATTCCTCTCATCCTGCATTATTTTCCATGttataattaatttttcttCCAGTCTTCAGTCATTTTCCACTGCTGGTTCcttctctgtcacttttattcTCATGAGAAAACATCTAGATTAGCCTAAGAAATGGCAGATTTGTCACTGTCTGAAGTTCTGACCCATATCAAAGGGAGCTTTGCGTCGCtgctacacacaaacacatacacacaaataattCTACTGGACTTGAACGGAACCAGAATCATCCGGAATATTTTGGTACACTACTCCTGCTCTTCGAATGAGTGCTTCAGAATCAGAGATGTAAGCTGTTCTGTATCAAAActattaaagcaataaaattctattaaaataatgtgaaa

Function

symbol description
rreb1b Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human RREB1 (ras responsive element binding protein 1).

NR:

description
ras-responsive element-binding protein 1 isoform X1

GO: NA

KEGG:

id description
K20210 RREB1; ras-responsive element-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602815.2 True 9218 mRNA 0.49 13 4076926 4155395

Neighbor

gene id symbol gene type direction distance location
ly86 NA coding upstream 18353 4051732 ~ 4058573 (+)
fars2 fars2,LOC107593111,LOC107692761 coding upstream 127047 3756407 ~ 3949879 (+)
ppp1r3g NA coding upstream 479545 3595795 ~ 3597381 (+)
LOC103035299 cyb5a,LOC103035299,LOC108431496,LOC108272069,LOC107593110,LOC107713729,LOC107653797,LOC107692771 coding upstream 492723 3572497 ~ 3584203 (+)
fam69c fam69c coding upstream 571671 3465675 ~ 3505255 (+)
LOC103038427 snx16,LOC103038427,LOC108431374 coding downstream 600463 4755858 ~ 4777076 (+)
wwp1 wwp1 coding downstream 672049 4827444 ~ 4876837 (+)
cul2 cul2 coding downstream 733879 4889274 ~ 4909032 (+)
nrp1 nrp1,LOC107565689,LOC106578544 coding downstream 1573123 5728518 ~ 5821874 (+)
itgb1 itgb1,itgb1a,LOC107566918,LOC107565694,LOC107653806 coding downstream 1676438 5831833 ~ 5874724 (+)
G88298 NA non-coding upstream 53375 3975729 ~ 4023551 (+)
G88305 NA non-coding upstream 75031 4000427 ~ 4001895 (+)
G88294 NA non-coding upstream 175315 3901026 ~ 3901611 (+)
G88292 NA non-coding upstream 225738 3850083 ~ 3851188 (+)
G88291 NA non-coding upstream 234709 3841883 ~ 3842217 (+)
LOC111193316 NA non-coding downstream 4155 4159550 ~ 4173459 (+)
G88327 NA non-coding downstream 41932 4197327 ~ 4199144 (+)
G88344 NA non-coding downstream 297239 4452634 ~ 4453868 (+)
G88454 NA non-coding downstream 372704 4528099 ~ 4528324 (+)
G88459 NA non-coding downstream 417816 4573211 ~ 4573628 (+)
G88473 NA other downstream 524718 4680113 ~ 4680837 (+)
G88486 NA other downstream 641427 4796822 ~ 4806673 (+)
pard3 LOC108431315 other downstream 756261 4911656 ~ 5463025 (+)
trnap-agg_3 NA other downstream 3087511 7242906 ~ 7242977 (+)
G88849 NA other downstream 3423215 7578610 ~ 7579960 (+)

Expression


Co-expression Network