LOC103043891 (LOC103043891,LOC108431261,LOC107655697,LOC107653805,LOC107566917,LOC107714010,LOC108271824)


Basic Information

Item Value
gene id LOC103043891
gene name LOC103043891,LOC108431261,LOC107655697,LOC107653805,LOC107566917,LOC107714010,LOC108271824
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 5929824 ~ 5988498 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007238662.3
CCCTGATTGAAGGTTTAGCTGATCTACCTGCAGAGTCAGCATGACCAAACTAGAAGACCAGCATGATCATCAAAACTGAGCATGACCACATGAATTTCTTTAACAGCTCAGTGGATGACTTGTGTTGGAATTCTGTGGAGTTGCCCTTTAAAGTGAGCGGTCTCTTTAAAGCCCCCGAGCTTCAGCCCCTGCCTCCATCCCTCTCGTGGAGAATATGATCTGGAGTTTCTCCTCAGCGCGAGCAGAGTGGACTAACAGTGGACCTACAACATCTAGACCCGCACAGAGCTCCTCTATCTGCAGCTGTAGCACCGCagcgcagcacagcacagcgTTACGCGCTCCTGGCTCGTTTCCCACATTACGATACTGAGCGCTGAGGGAGTAACGGGGCATTGTTTTCTGAGGTGTTCCAGCTTTTCTGAGTGCTGTGTGTTTACAGCGCCATGTGTGCTGCGGTGTTCTGTGGATAGACCATGTCTTCTTCTTCAGGATGGGCGCAAACAATGGCAAACAGTATGGAAGTGAAGGTAAAGGAAGCTCCAGCATTTCCTCCGACGTGAGCTCCGGCACTGATCACACGCCCACCAAAGCTCCCAGGAATGTGGCTACCAGTGAAGaCTCAGATCTCAGCATGCGGACACTGAGCACCCCCAGTCCTGCTCTCATCCTAAGCCCGAGGTCTTCTCCACTTTCTCCCCAAACTGTCCCAAATGGTCACGAATCTCCATCCCCATCCTCCACCATTCCTGGAGAAACTGTTGCCATTGTGCACGCCCCTCCTTCAACGCAAGTCTCCAAACGTCCTTCTAAGACTCACCACACACCGCTTATTGACTTCCTCCCGGACCCCGTCCTCCTGCAGGTGTTCTCCCACCTGTCCACTCCGCAGCTGTGCCGCTGTGCTCGAGTCTGCCGCCGCTGGTACAACCTGGCCTGGGACCCACGCCTCTGGAGAACCATCCAGCTGACTGGAGAGTCGCTCCACGCTGACCGAGCCCTGAAGATCCTCACCCACCGTCTGTGCCAGGACACCCCCAACGTGTGCCTGACCCTGGAGACTGTGGTGGCCAGCGGCTGTCGAAGGTTGTCGGACCGTGGCCTACATGTGGTGGCGCAGTCGTGCCCGGAGCTGAGACGCCTGGAGGTGGCAGGCTGCTATAATGTGACCAATGAGGCTGTGTTTGACGTGGTGTCCCGCTGTCCCAACCTGGAGCACCTAGATGTGTCAGGCTGCCCCAAAGTGACCTGCATCAGCCTGACCCAGGAGACCTCAGTGCAGCTATCCCCCATCCAGGGCCAGCAGACCGGCCTACGCTACCTGGACATGGGCGACTGTGTTTCGCTGGAGGACAAGGGTCTTCACGCGATCGCCTCACACTGCCCACGCCTCACACACCTGTACCTGCGGCGCTGCAGCCGGCTGTCAGACGAGGCCCTGCGCCAGCTGGCCCTGCACTGCCCCGCCCTGCGAGAGCTCAGCCTCAGCGACTGCCGGCTGATCAGTGACTTCGGGCTGCGCGAGGTGGCGCGCATGGAGGGCCGTTTGCGGTACCTAAGTGTGGCACATTGCACACGCATTACTGACGTTGGCCTGCGCTACGTGGCTCGCTACTGCCCGCGTCTGCGCTACCTGAACGCCCGGGGCTGCGAGGGGCTGACGGACCAGGGCTTGGGCCACTTGGCCCGCAGCTGCCCCAGACTGCGCTCGCTGGACGTGGGCCGCTGCCCGCTGGTGTCGGACATGGGACTGGAGATTTTAGCGCACTGCTGCCCGGGGCTCCGGAGGCTCAGTCTGAGAGGCTGTGAAAGCGTGATCGGGCGAGGGCTGCGGGCACTGGCTGCAGGTTGCCCTGAACTGCAGATGCTTAACGTGCAGGAGTGCGAGGTGCCCCCGGAGGCTCTGCGACTGGTCAGACGCCACTGCAGACGCTGTGTGATAGAACACACCATCCCGGCCTTTTACTGAGAGCGCGGGAGGATGTGATGGGAACACTGTTCTGACAAGCGGATAACTTTTCTTAGCCGCAGCTTTTTATGGTTGGTTGCTGTAGAATGTGTGTGATGTATGAAGCTCTGTTCAAGGTGGATTATTTTACCTGGGGAGGAGAATTTAGTGTAATTTGATAAGTGTGTGatctgcaataaaaataaaatatcacaattaGGGCTAGaagatttattttacaatatatatttattcattttggtccatatgatttaaattaaattttaatccTGACAATAGTCTGTATCTAAAAGCTTATGAAAAAGGCTTAAGaaataatgtactgtatatttaaatgtattttaaaaatgtcaccgttattaaattttattttttattcccataattattgattttaaatcatTGTCCAGTCCTGAACATAATACTTTCATACATGATTTAGATACACAGTATTGAAATATCAGTTACACAGTTCCCCAATCCACTCACTAGGGCTCCCCCTATTCCTCATAATGCCCTTAACATTAGGATAGAGAACACCAGCACATGACTCCTCCGATAACTGTGAAGTCAGCTACTGGCTCTTGTCCAATTACAACTTACGTAGCATTACTTGGAAGCCAGCGTACTTAAAGAAAAGCACAGCAactcagctctgatacatcagctaatagacagatgcctgtgctgaaacaacattatattaaaagtgATGTGTGGATAGAGTGCCATCTcaccacccagagggagcataTCCAATAAggctctctctgactccagcTACTGATGGCAAGCACCATGACCTGGGTTTTGAACCGGCAATTATTTGTTGTGTCTCATGTAAACTTGGCTGCTACTTGGTTTTTGCTTGGTTACAAGCAAGTGAGGTGTACTGATACAGAGATCAGGGTTCAGAGTGCTGTTACTGTCTGATACTGACTCTTAGCAAATGGGTTTTACCCAATCACAGTCTAAAATCGGATCTGTGTTACAAAtcattatcgtttatattcagtatttctCACATATTTAATCAGTATTATTGCTTCTGTGGAACTATTAATgtattaacacatttaaaaatatttttttcttttaatcctGTTCCAATAACCATACTTCTAATTATTTACAGGAGTAGTCCCTATTATGCGCATCTAGACTATGCCATTTCTCTgtgggccaattgtgctccagCATTTTGTGGGAAATTACACAGATAATCCCAACAAACTACATTACAAGACCTCCTCTGGTAAAACAAATCCACCGTGAGCAGTGCTTACGATGACTTTGTGTGCAATACATGCCTCTGTTGAAGTAGTTATGCAGTCCTTGCCAATACGTGATGTGTGTAAAAGTATTTATCAGACAAAAGGGTTACATTACTATATAAGCTGatattctaactaaagctggTATTCTACTATGTTTGTCTATGTCAAAAGATATTGAtctttttgagtttttattgaaATACTGACCTGACTTATGCTATATGTGCAGCATCACCACTGTCCGGATATACTTTATTGCCTTTTTTATACTATAGAAGCATTGGTTCTCAGCCCTGGCCCTGGAGTGCACCCCCTGCTGGTGTTGCAAGGCATcgctgtccaaagaaaaacacttaCATATGCACCCTCCTTATTAGCAACTTTTCAGTAGAAGGTAAAAACCCATCAAATTTTAAtgggtttaattttaaatgtaaaaatattttattctcatTTGAAGTGTTTCGGttggttcattcatcatgaTCTTTTAATACAATGTGAAGGACAGCTGACATgttcaaataatataataaacaaaggaaaacatAGAGATACATAAAGGATTCCGGATCGGGATTGGCCACactgttttaatattgtttCAGAGTATGTCCATTCCTTTGTCTTTTACAGTGCTtgtataataatgtgtttaatgtggGTACTTGCACTTTAAAATTAATCTGCGACAATCACTATTGTTGTATTGAAAGTGCCATTTTTATGTAGCTGTGTAAAGCTGAAGAAGTGCCCCTGGACAAGACAGGGAATACAGAAAAAGGGAACAGTTATAATCAGTGTTACGGAGTTGTTGATTCAAAGAAATGATACAAAGAAACATTGCTGCTACAAATAAAGGGCTACTTATTTAA

Function

NR:

description
F-box/LRR-repeat protein 7-like

GO: NA

KEGG:

id description
K10273 FBXL7; F-box and leucine-rich repeat protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007238662.3 True 4121 mRNA 0.47 5 5929824 5988498

Neighbor

gene id symbol gene type direction distance location
LOC103042448 NA coding upstream 3369 5875704 ~ 5926455 (+)
itgb1 itgb1,itgb1a,LOC107566918,LOC107565694,LOC107653806 coding upstream 55100 5831833 ~ 5874724 (+)
nrp1 nrp1,LOC107565689,LOC106578544 coding upstream 107950 5728518 ~ 5821874 (+)
cul2 cul2 coding upstream 1020792 4889274 ~ 4909032 (+)
wwp1 wwp1 coding upstream 1052987 4827444 ~ 4876837 (+)
LOC103044377 napg,LOC108271818,LOC108431250,LOC105890170,LOC107734322,LOC106590336 coding downstream 3628 5992126 ~ 6001148 (+)
vopp1 vopp1,LOC107728740,LOC107757191 coding downstream 1280231 7268729 ~ 7326748 (+)
LOC111193320 NA coding downstream 1740041 7728539 ~ 7735786 (+)
vps16 vps16,LOC107705536,LOC106592068,LOC107706675 coding downstream 1775379 7763877 ~ 7785181 (+)
rgn rgn,LOC108430038 coding downstream 1797824 7786322 ~ 7796482 (+)
G88541 NA non-coding upstream 27120 5845611 ~ 5902704 (+)
G88538 NA non-coding upstream 292562 5637020 ~ 5637262 (+)
G88532 NA non-coding upstream 633285 5293618 ~ 5296539 (+)
LOC111193318 NA non-coding upstream 888814 5039855 ~ 5041010 (+)
G88475 NA non-coding upstream 1020784 4876300 ~ 4909040 (+)
LOC111193319 piezo2,LOC108431241,LOC108271803,LOC107734312 non-coding downstream 18597 6007095 ~ 6015307 (+)
G88637 NA non-coding downstream 126017 6114515 ~ 6148334 (+)
G88640 NA non-coding downstream 181898 6170396 ~ 6206486 (+)
G88641 NA non-coding downstream 205215 6193713 ~ 6214437 (+)
G88642 impa2 non-coding downstream 231577 6220075 ~ 6225578 (+)
pard3 LOC108431315 other upstream 466799 4911656 ~ 5463025 (+)
G88486 NA other upstream 1123151 4796822 ~ 4806673 (+)
G88473 NA other upstream 1248987 4680113 ~ 4680837 (+)
trnap-agg_3 NA other downstream 1254408 7242906 ~ 7242977 (+)
G88849 NA other downstream 1590112 7578610 ~ 7579960 (+)
LOC111193322 NA other downstream 2088599 8077097 ~ 8080028 (+)
sumo1 NA other downstream 2253821 8242319 ~ 8249434 (+)
G89453 NA other downstream 3614273 9602771 ~ 9610254 (+)

Expression


Co-expression Network