rgn (rgn,LOC108430038)


Basic Information

Item Value
gene id rgn
gene name rgn,LOC108430038
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7786322 ~ 7796482 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248886.3
cgctccgctccccCCGCTCTGTTCTCTGATCACGGTGAACTTTACTCTCCCCTATAAACAGTCGGTTCTGCTCGGAGCGGAGCGCCAGCGGGAGTCTCTCTGATCCAGacaCCATGTCGAACATTAAAGTAGAGTGTGTAGTGAAGGAGCCCAGTGAGATTGGAGAGAGTCCAGTCTGGGAGGAGAAGGACTCCACTCTCCTTTATGTGGACATCTACGGCCTGAGGATCAGCAGATGGAGCTCTTTGACCAATCAGATTGAGAGCATGCCCACAGagGCGTATGTGGGCTGTGTGGTGCCGCGGAGGTCAGGAGGTTACATAATCGGAGAGGGTACACGCTTTGCGGCAGTCGACTGGCAGAAGAGGTCCATCACCACCATTAAACACGTGGACACGGACAAGGGCAACACGCGCTTTAACGATGGGAAGGTGGACCCTGCTGGCAGGTTTTTTGCAGGAACCATGGGTATTGAAGTGCGCCCAGCGGTGGTTGAGATGAAGCAGGGCTCTCTGTACTCCCTTCATCCTGACCACTCTGTTGTCAGACACTTTGACCAGGTGGACCTCTCCAATGGACTGGACTGGTCCCCAGACCATCGCTTCTTCTACTACATAGACAGTCTGAAGTACACAGTGGATGCCTTTGATTATGACATACAGACTGGAGGCATATCCAATCGCAGGATGGTTTACCGCCTGGAGAAAGATGAAGGCATTCCCGATGGCATGTGCATTGATGCAGAGGGTAAACTATGGGTGGCCTGCTACAGTGGAGCAAGGGTGATTCGCATTGATCCACAAACAGGAACCAGACTGCAGACAGTGAAGTTGCCCGCTGCGAAAACCACGTCATGCTGTTTCGGAGGAAAAGACTACACTGACCTTTACGTCACGTCTGCTTATAAAGGCATGGACGAGGAGTCACGAGCCCAACAGCCTGAAGCTGGCTGTATTTTTAGGGTCTCTGGTTTAGGAGTGAAAGGAATTCCTTCATACGCATTTGCTGGCTGAAGATCACActaaggaaaaaaagagagggtcATATATGCAAACTAATATAGAATCATTCGGTTCAGGTagcatttttatcaatttggTGAAAAAACATACAGGtagactgaataaatatttttaagctACATGTGTGGAAGCGTATTAATtactaactaattactaattattaattattaaatattaaaacaaactcttttttcttaaaaaaaatgactagtgattactgtttttaagcATAATTGTTTACAGTaactaaaaaatgaaaaaaaaaaattaatactaaCAGTTCTATAATGGACACTTGATCACTGTGTAGTTTTGTTTCCAGTGTGTGAACTGTTAACTGTGTGAACTGTGTGAACtggaactgtgtatcagagtaTATTTAGCTGTTTCCATGGGAAAGGAGTTAGGAAACATTGTATTGTATCTATCATTGCATTCCTGTTTTATGTAAGTCAGTGGTTTGAATGAGAAACATTGTGAATGTCATGTGATTTACTGGTAGGATTGTATTCATTTATGGGCCTGTAACTTGCCATATGTGCCATGATCTTTTCACTGTGCTGTTTTTAAAGGGATTTTGATAACActtaagaataataaaataaaataataatataaaatttaagAAAATGAAGAGTATATTTCTCTTTatccttttattgtttttctaaaatcaaggcaattataaaatagtttattctatttattacaAGGTGCTACTGTCCCTGAAGGTTTATACCCTTCTAGCCCATGCTTGTCATTATATTCAGACCCCCAAATGACTAAAACCTTATTACTTTAGTCTCATTACAACTTTATGGAATGTGCTgtaggcctgaaatgcagggacatatgtatattaataaataaaacaaagttaaacagacaaaacatgacATATCTTGGATTATcatgtctgcaatcaaataaaagtcaaaggaaATATAAGAATTACCGTACTGAACAATGAATAAAATTGCTGCAAAATTTGAAA

Function

symbol description
rgn Predicted to enable calcium ion binding activity; gluconolactonase activity; and zinc ion binding activity. Predicted to be involved in several processes, including L-ascorbic acid biosynthetic process; positive regulation of ATPase activity; and regulation of calcium-mediated signaling. Predicted to be located in cytoplasm and nucleus. Is expressed in intestine; kidney; and liver. Orthologous to human RGN (regucalcin).

NR:

description
regucalcin

GO:

id name namespace
GO:0019853 L-ascorbic acid biosynthetic process biological_process
GO:0032781 positive regulation of ATPase activity biological_process
GO:0050848 regulation of calcium-mediated signaling biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0030234 enzyme regulator activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004341 gluconolactonase activity molecular_function

KEGG:

id description
K01053 gnl, RGN; gluconolactonase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248886.3 True 2016 mRNA 0.41 7 7786322 7796482

Neighbor

gene id symbol gene type direction distance location
vps16 vps16,LOC107705536,LOC106592068,LOC107706675 coding upstream 1141 7763877 ~ 7785181 (+)
LOC111193320 NA coding upstream 50536 7728539 ~ 7735786 (+)
vopp1 vopp1,LOC107728740,LOC107757191 coding upstream 459574 7268729 ~ 7326748 (+)
LOC103044377 napg,LOC108271818,LOC108431250,LOC105890170,LOC107734322,LOC106590336 coding upstream 1785174 5992126 ~ 6001148 (+)
LOC103043891 LOC103043891,LOC108431261,LOC107655697,LOC107653805,LOC107566917,LOC107714010,LOC108271824 coding upstream 1797824 5929824 ~ 5988498 (+)
LOC103027817 NA coding downstream 851 7797333 ~ 7803815 (+)
LOC111193321 LOC107584855 coding downstream 12534 7809016 ~ 7817569 (+)
LOC103042672 zgc:112392,LOC108430045,LOC108272735,LOC107705522,LOC107584803,LOC107581439,LOC106575771,LOC106574874 coding downstream 22549 7819031 ~ 7828733 (+)
LOC103033509 tbx19,LOC108430034,LOC108272403,LOC107677559,LOC107660020,LOC107581437 coding downstream 35890 7832372 ~ 7852994 (+)
LOC103032863 kalrn,kalrnb,LOC107706669,LOC107581345,LOC107705539,LOC108272447,LOC107677582,LOC107659990 coding downstream 99808 7896290 ~ 8069115 (+)
G88886 NA non-coding upstream 45388 7739421 ~ 7740934 (+)
G88867 NA non-coding upstream 72131 7669255 ~ 7714191 (+)
G88801 NA non-coding upstream 309072 7426023 ~ 7477250 (+)
G88799 lancl2 non-coding upstream 390512 7352453 ~ 7395810 (+)
G88798 NA non-coding upstream 448630 7283189 ~ 7337692 (+)
G88906 NA non-coding downstream 58387 7854869 ~ 7855150 (+)
G88908 NA non-coding downstream 60899 7857381 ~ 7857621 (+)
G88917 NA non-coding downstream 73294 7869776 ~ 7871020 (+)
G88919 NA non-coding downstream 76595 7873077 ~ 7873431 (+)
G88976 NA non-coding downstream 278999 8075481 ~ 8075694 (+)
G88849 NA other upstream 206362 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 543345 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 2323297 4911656 ~ 5463025 (+)
G88486 NA other upstream 2979649 4796822 ~ 4806673 (+)
G88473 NA other upstream 3105485 4680113 ~ 4680837 (+)
LOC111193322 NA other downstream 280615 8077097 ~ 8080028 (+)
sumo1 NA other downstream 445837 8242319 ~ 8249434 (+)
G89453 NA other downstream 1806289 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 2178715 9975197 ~ 10000914 (+)
G89805 NA other downstream 2889175 10685657 ~ 10686056 (+)

Expression


Co-expression Network