LOC103027817


Basic Information

Item Value
gene id LOC103027817
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7797333 ~ 7803815 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248885.2
TTATGTGCAGTGTTACGTGTACTGTTATATGTAGTGTTATGTGTACTGTTATTTGTAgtgtttagccccgcccacttgtTTCACTCTGGATCTCTACAGGAAGACAGCAGCAGAGGGCAGGAGctcttagccccgcccacaacTCTACACTACAGCACAGCAGCTGATCTGCAGCAGCTGCTCGGGTTTAGTCTCAGCTCGGGTATATTTTACAGCTTCTCTTTCTCTGAAGCTGTTCATGAAGCGAGTCCGAGTCTCAGCAGTGCCGCGGTGACCCTCAGTCTGTGTGGGAGAGTTAGTTATTACCCTGAGAGAATGAGGAAATGACGGAGCTGTCTGcagtatctgctgctgctgtttcctCCTCCATTTTAGCTCTCCTCTCTCAGACTACAGCTGAATCTGATAAACTATGGATGATTTAGGGGACTGCACAGGGGACTGGGGTGTTTCCAGCTGTTCGGACTGGATGTCACAGCTGCCTGCGCAGCTCCACGCTGCTGCTCTGTGGGATCTCGCCATCCCTGgcaGTCATGATACCATGACCTACTGCCTGGACCAGCATTCTCCAGTTCTGCAGTCCCAGCCCAGGATCCTGAAAGTGCTGGACCACATTGTGCCCTGTATCATCCGCCCCTGTGTGAACAACTGGGGCACCACTCAGGAGCTGATTATTTCCACCCAACTGGATTCAGGAATTCGATTTCTCGACCTCAGGATTGCTCACAAGGCCAATGATTTTGATCAAAACTTTTACTTTGCTCATGGGATATACTCTTTGGTGACTGTGAAGGAGGCCCTCACTGACGTAAGCCTCTGGTTAGAACAGCATGCTAAGGAAGTGGTCATGATTGCTCTCTCTGCCTTTGAAGGAGTAAATCCAACCCAGCACAGAAAACTCATTGACTTTCTCAAAAGCCTATTCGAGAAGAAACTCTGCCCCAAAACAGAAGAACCTACACTGAAGAAGTGCTGGACTCGAGGCTATCAGGTTATTCTCTCGTATGCTGACCCGTCTGGCTCTGGTCATAGGGAACTGTGGCCAGCCTGGGATTATTGGTGGGCCAACGACTCGGACCCCAGTATGGTTATTTCGTACCTGGAGGACAGGAAAGAGAATGAGGGAAGACCAGGTTGTTTCTTTGTAGCTGGTCTAAACCTCACGGAAGATACCAGGTATGTCCTTCGCCATCTCGGGCAGTCTATGAAGACCATGACCCTCAGGGCCTACAGTCTGCTGATGGACTGGGTCAAACAGCAGCGCCCCGGCTGCCAGAAAACGTGCTTCAATGTCATCTGTGCAGACTTTGTTGGGTTCTCAAGAAATGAATTTACTCAGCTGGTTATTGGACTCAATGCAAAACTCTTTTAAGAAGAGCCCTCAGGGAAGTTTACAGCAGTCTGCCCATTGATGATTTAATGTCTGTAGTCTACACTGTTGAGTTAATggacacaaaagaaaaaatcaacaaataacCACATTTTAACCACTTTTCCCCTTTTGGGAAAATCATTAATATATCATtgttttacctctttttttacatttagacaattttttttacatttagaaaCACAATGTTGTtcatttagggtgttttcacatctGTCCTGAGTCCACACTTATGACAGATTCTGTGCTTGTTTGATGGAGGGGCTGTTTGTCACTGATTTGTTTTCACGCACAAAAAATTGGGACCGTGGATTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248885.2 True 1709 mRNA 0.47 6 7797333 7803815

Neighbor

gene id symbol gene type direction distance location
rgn rgn,LOC108430038 coding upstream 851 7786322 ~ 7796482 (+)
vps16 vps16,LOC107705536,LOC106592068,LOC107706675 coding upstream 12152 7763877 ~ 7785181 (+)
LOC111193320 NA coding upstream 61547 7728539 ~ 7735786 (+)
vopp1 vopp1,LOC107728740,LOC107757191 coding upstream 470585 7268729 ~ 7326748 (+)
LOC103044377 napg,LOC108271818,LOC108431250,LOC105890170,LOC107734322,LOC106590336 coding upstream 1796185 5992126 ~ 6001148 (+)
LOC111193321 LOC107584855 coding downstream 5201 7809016 ~ 7817569 (+)
LOC103042672 zgc:112392,LOC108430045,LOC108272735,LOC107705522,LOC107584803,LOC107581439,LOC106575771,LOC106574874 coding downstream 15216 7819031 ~ 7828733 (+)
LOC103033509 tbx19,LOC108430034,LOC108272403,LOC107677559,LOC107660020,LOC107581437 coding downstream 28557 7832372 ~ 7852994 (+)
LOC103032863 kalrn,kalrnb,LOC107706669,LOC107581345,LOC107705539,LOC108272447,LOC107677582,LOC107659990 coding downstream 92475 7896290 ~ 8069115 (+)
LOC103024957 LOC108429998 coding downstream 414306 8218121 ~ 8222533 (+)
G88886 NA non-coding upstream 56399 7739421 ~ 7740934 (+)
G88867 NA non-coding upstream 83142 7669255 ~ 7714191 (+)
G88801 NA non-coding upstream 320083 7426023 ~ 7477250 (+)
G88799 lancl2 non-coding upstream 401523 7352453 ~ 7395810 (+)
G88798 NA non-coding upstream 459641 7283189 ~ 7337692 (+)
G88906 NA non-coding downstream 51054 7854869 ~ 7855150 (+)
G88908 NA non-coding downstream 53566 7857381 ~ 7857621 (+)
G88917 NA non-coding downstream 65961 7869776 ~ 7871020 (+)
G88919 NA non-coding downstream 69262 7873077 ~ 7873431 (+)
G88976 NA non-coding downstream 271666 8075481 ~ 8075694 (+)
G88849 NA other upstream 217373 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 554356 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 2334308 4911656 ~ 5463025 (+)
G88486 NA other upstream 2990660 4796822 ~ 4806673 (+)
G88473 NA other upstream 3116496 4680113 ~ 4680837 (+)
LOC111193322 NA other downstream 273282 8077097 ~ 8080028 (+)
sumo1 NA other downstream 438504 8242319 ~ 8249434 (+)
G89453 NA other downstream 1798956 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 2171382 9975197 ~ 10000914 (+)
G89805 NA other downstream 2881842 10685657 ~ 10686056 (+)

Expression


Co-expression Network