vps16 (vps16,LOC107705536,LOC106592068,LOC107706675)


Basic Information

Item Value
gene id vps16
gene name vps16,LOC107705536,LOC106592068,LOC107706675
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7763877 ~ 7785181 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673348.1
AACGTACGACTGACTGAAACTGcaccaccaaaacacaccaaacaagACGAAGAAGGCTTGCTCAATGATGGGCGAGGAAACCAgcaatacattaattaaatatagtaaataacgCGGTTTAACTGGACATTAAACCCTGTTAATCTtctgctgacacacacacagaaaaccatGGCGTTTGTTACGGCCAACTGGAACCCGCTGGGAGAAGCGTTTTACAGGAAAACTGAGTTGTATGAGATGGGCTGGAATCTAAAGGATGGTCTCAGAGACTGTTTACTGGCTGCAGCTCCCTATGGTGGGCCCATAGCTCTGCTGAAGGAACCACAGCGCCGCTCTCCTAGTTCCCGACCTCAGTTGGAGATCTATTCTGCTTCTGGAGTGACTATGGCCAGTTTTCTGTGGAAGAGTGGTGTAGTGAGGCAGCTGGGGTGGACAGTGTGTGATGACCTCCTGTGTATTCAGGAAGATGGCACTGTTCTTATTTATGATCTTTTTGGCAGCTTCAAGAGACACTTCAGCATGGGCAatGAGGTGGGACAAAGTCAGGTTGTGGAGGCTAAGGTGTTTCATTCACCCTATGGAACTGGTGTGGCCATTGTAACTGGTGCATCCCGCTTTACCTTGGCAACAAATATTGACGACCTGAAGCTTAGGAGGTTACCTGAGGTGCCAGGCCTTCAGGGGGCGCCCACTTGTTGGGCAGTCCTTACTCAGGACAGACAGAGTAAAGTGCTGGTGGCAAATGGTGGTGATCTCTTTATTTTGGACTACACCGCCTGCACTGCTGTGAACCCTCCAGGTCTTTCTCCACAGGCTTCCAGTAtagtgcacatgtgtgtgtcATTCAGTTACAAGTATCTGGCCCTGTTTACTGACTCTGGCCATGTGTGGATGGGCAGCGCCAACCTAAAGGAGAAGCTCAGTGAAGTGGAGACAAAAGTCAGAAATCCACCCAAACAGATGGCCTGGTGTCGTCGGCCTAAGAGTCGGCAGCCCTCTGTGGTAATCATGTGGGATCGACACCTTCTGGTGGTAGGAGAAGGTAAAGATACCATCTCGTATCACCTAGAGGACGACTCTATTTTGGTGCCAGAAATGGATGGGGTTCGAATCATCAACGGCACAAACCATGAACTCCTGCAGGAAGTGCCAGCTTCCTGTGAGGAGATCTTCAAGATAGCGTCAATGGCTCCTGGAGCACTGCTGCTGGAGGCCCACAAAGAATATGAGAAAGAGAGTCAGAAGGCGGATGAGTATctgagagagataaaagagcaAGGTCTTTTAGCTGAGGCTGTGAGGCAGTGTGTGGAGGCAGCAGGACATGAGCAAGAGGCAGAGACACAGAAAACACTCTTGAGGGCGGCCTCCTTTGGAAAGTGTTTCCTGAGTAATTTCCCTCCAGAGCTGTTTGTCATCATGTGCCGAGACTTGCGTGTGTTAAACGCAGTGAGGGACTACACTGTGGGCATCcctctcacccacacacagttcAAACAGATGACTGTTCAAGTGCTCATAGACCGATTAGTGTACCGTAAACTATATCCTCTGGCCATTGAGATCTGTCGCTATCTGAAGACCCCAGAGTACCAGGGAGTGAGTCGAGTCCTGAAACACTGGGCCTGCTGcaaggtgCAGCAGAAGGAGGAGAGTGACGAGGTCATTGCAAGAACCATTAGTCTGAAGTTGGGTGAAGCTGCTGGAATCTCTTACTCTGAGATCGCGACTAAAGCCTACGAGTGTGGTCGTACAGAACTGGCTATAAAGttgcTGGAGTTTGAGCCTCGCTCTGGGGAGCAGGTTCCTTTATTGCTGAAGATGAAGAGGAGCCAGTTGGCCCTCAGCAAAGCCATTGAGAGTGGAGACACAGACCTAGTGTATACAGTGGTTACATATCTAAAGAATGAGATGAACAGAGGAGACTTCTTCATGACTCTGCGGAATCAGCCGGTGGCTCTCAGCCTTTATAGACAGTTCTGTAAACATCAGGAACAGGACACTCTAAAGGATTTATTCAATCAAGATGACGATCATCAAGAGTTGGGAAATTTCTATGTGAAAGCTAGCTACAAAGAAAAGagATTAGAGGCCCGTGTAGCTCATTTACAGAGTGCTGTGGATGAATATAACAAGGCAAAGAATGAGTTTGCTGCCAAGgCCACAGAAGAGGAAATGCGTCTGTTGCGTTTCCAGAAGAAGCTGGAGGAGGAAAAagCACGCAAAAACACGCCAAAACCGACTTCAACGAGTCCTCCAGCTAATAAGGCTGCTAGCATTAGCAACGACAACATGGCTAACATAGCCGAAGTTTTAAACGAGCTGAAAGCGCTTCGTGCGGACTTCGGGACGAAGCTGGATAATATGACCAGTCACTTGACCGATATGACAGCCTCGCTGACATCACTGGAGAGCAAGGTAACAGAAATGAGAGGAGATGTTTCTGCTAACACAGCCCGCATTGATGAAGCAGAACGCCGTGTCAGCGATGTGGAAGATGTACTGGAAAACACTAAAGCTACATTGAACTCGGCAATTAAGCGAATCGCCTTTCTCGAATCCAAAGCAGACGACCTGGAAAATCGGGGTAGGAGAAAGAATCTCCGTGTGCTTGGGGTGAGAGAGGGAGCTGAAGGTAAACAGCCATTGTTCGACTTCATGAACAACATGCTACCGCGATGGCTGGGGTTGAGTTCTGAAACAGCTTTCACCTTGGAGCGGGTGCACCGCACACTCGCATCTGCAAAACCCAACCAAAACAGAGCGATTTTGGTTCGCTTTCTAAAGTTCCAGGAGAAGGAGTTCGTTTACAGAGAAGCACGGCGCAAGGACATTACTCACGAAGGGGCAAAGATCACGGTGGTGCAGGATCTCTCAGCGGAGACAGTTCGAATTCGCCGAAGCTTTAACGCTATTACTAAGCAATTTGTTGACATCAAGGCCTTCCGCGGATTTCAACACAGTCCCTGCAAACTCAGAGTCCTGCATAATGGCAAAATACACCTCTTCTCAACACCGCAAGAAGCGGAGGAATTCTATGGGAAGATTTCCCAGCCCAATGATATGGAGGGGGCTGCGGATGCTGCTATAGAAAGGCGTAATGAAGGAGAGATCAGCACCATTCTGTCCCGCTGTTCTCCCACCACAGACCGGGCTCTGGTCGAACGTCTTAACCGTGCTAAATCCACTGCTGCCAAAAAGTGAAACCCTGCACTACATGATGCATTGTTCAGCTGGACAGCAGCTGCTGCCAAACAGTGACCCCGCCCCCTGATCCCAGTGTGTTAaactgcagctgatggcagTTCCTGGGGGTTAAACCTGAATTACGGTTCAGCAAGACCTGTGTTCTGATGGAGGACTCTGTAAGGACCTGCTTAATGGGTATGTGGGGTGGATTAGGCGGCTCTGTTAACActtaaataaaagaacaaaagaaagaaggaacTGGATTAAGTATCTCTTGCTCACTATGCTTTATATTTCCACATTCAGCAAGTCTTTAACACTGCACTTGTTTCTTACTTTACTTTATGAAGTTCAGCTTGTTTGCTGATGTTGAACTAAATCACAAAAACTGTACGGTCTGTGTAAATTAATCTTCTGTGCTTTTTAGCCTTtatgtgtgtaatgtaaaaCACTGATTAACTGTGTAATTAAACCTTACATGTGATAAATAA

Function

symbol description
vps16 Predicted to enable actin binding activity. Predicted to be involved in endosomal transport and vacuole fusion, non-autophagic. Predicted to act upstream of or within intracellular protein transport and vacuole organization. Predicted to be located in early endosome; late endosome membrane; and lysosomal membrane. Predicted to be part of HOPS complex. Predicted to be active in endosome. Human ortholog(s) of this gene implicated in dystonia. Orthologous to human VPS16 (VPS16 core subunit of CORVET and HOPS complexes).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 16 homolog

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K20180 VPS16; vacuolar protein sorting-associated protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673348.1 True 3683 mRNA 0.48 21 7763877 7785181

Neighbor

gene id symbol gene type direction distance location
LOC111193320 NA coding upstream 28091 7728539 ~ 7735786 (+)
vopp1 vopp1,LOC107728740,LOC107757191 coding upstream 437129 7268729 ~ 7326748 (+)
LOC103044377 napg,LOC108271818,LOC108431250,LOC105890170,LOC107734322,LOC106590336 coding upstream 1762729 5992126 ~ 6001148 (+)
LOC103043891 LOC103043891,LOC108431261,LOC107655697,LOC107653805,LOC107566917,LOC107714010,LOC108271824 coding upstream 1775379 5929824 ~ 5988498 (+)
LOC103042448 NA coding upstream 1837422 5875704 ~ 5926455 (+)
rgn rgn,LOC108430038 coding downstream 1141 7786322 ~ 7796482 (+)
LOC103027817 NA coding downstream 12152 7797333 ~ 7803815 (+)
LOC111193321 LOC107584855 coding downstream 23835 7809016 ~ 7817569 (+)
LOC103042672 zgc:112392,LOC108430045,LOC108272735,LOC107705522,LOC107584803,LOC107581439,LOC106575771,LOC106574874 coding downstream 33850 7819031 ~ 7828733 (+)
LOC103033509 tbx19,LOC108430034,LOC108272403,LOC107677559,LOC107660020,LOC107581437 coding downstream 47191 7832372 ~ 7852994 (+)
G88886 NA non-coding upstream 22943 7739421 ~ 7740934 (+)
G88867 NA non-coding upstream 49686 7669255 ~ 7714191 (+)
G88801 NA non-coding upstream 286627 7426023 ~ 7477250 (+)
G88799 lancl2 non-coding upstream 368067 7352453 ~ 7395810 (+)
G88798 NA non-coding upstream 426185 7283189 ~ 7337692 (+)
G88906 NA non-coding downstream 69688 7854869 ~ 7855150 (+)
G88908 NA non-coding downstream 72200 7857381 ~ 7857621 (+)
G88917 NA non-coding downstream 84595 7869776 ~ 7871020 (+)
G88919 NA non-coding downstream 87896 7873077 ~ 7873431 (+)
G88976 NA non-coding downstream 290300 8075481 ~ 8075694 (+)
G88849 NA other upstream 183917 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 520900 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 2300852 4911656 ~ 5463025 (+)
G88486 NA other upstream 2957204 4796822 ~ 4806673 (+)
G88473 NA other upstream 3083040 4680113 ~ 4680837 (+)
LOC111193322 NA other downstream 291916 8077097 ~ 8080028 (+)
sumo1 NA other downstream 457138 8242319 ~ 8249434 (+)
G89453 NA other downstream 1817590 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 2190016 9975197 ~ 10000914 (+)
G89805 NA other downstream 2900476 10685657 ~ 10686056 (+)

Expression


Co-expression Network