G88799 (lancl2)


Basic Information

Item Value
gene id G88799
gene name lancl2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7352453 ~ 7395810 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU119464
GTATCTGCAACCAGATCTGATTTTGTAAAGTATATTTATCTTTTCTCTCAAGACACAATACATTTGAACAGAAGTGTagatttaccttttaaaactgtaaatgaaatgtaattaacCATGAATTGAGCATAGACCAACATTATGCAACACATGCATTATGTTTAAAAGCACAACAGACCCAAAGAAtgaacacacatgtacacacactcagatgcatcataatgtgtgtgtgctgcttcAGCTGCATACCTTGCAGGCTCGGTACAGGTATTTGGGATCCTGTGTGAGTTTGTAGAGGGACAGGAAGGCGTATCCATTACCGGCCGTGCCGTGACAGATTCCGTATCCTTTCCTCAGTAATCCTCTCTGCCAAATTACCTCCCCACAGTCCACCGCATCCTTCACGTACTTCTCATCCTTAAACACCTATTGGCCATTATTAGCATGTGCACCACGCCTGGCGCTCCGTGACACCAGTGCACCAGCCTGTCTGTCTCgttgctgagggatgatgggtAATTGCCTGAGCGGAACTTTTTGTGCCGTACGTAATCTACACTGGGCCGAACCAATTCAGACAGCATCTCAGCATTCACCTTCGCCGAgggCTGCATCAGCATGTAGTAGATGCCAGCCAGGCCGTGTGCTGCGCCAACGTACTGCTTCTTGTGCCACTCGTAAAGCAGCGGACAGCGCTcagtcttcttctcttctttagaCAGGTTCTTCCCTGACTCCAGTATGGCAGTCACCACCTTTGAGATGGTGCTCTCATCCACTGTGTCTGAGCCGATCTCTTTGTTGACGTAGAGCAGGGCGAACAGGTACCCTGCCCGTCCGTACAGCAGCTCATCTGGCATGTCCGAGTCTGGACTGAGGACCGagcgctggagctgaagcaaCTTGGTGATGCATTCTTTAGAGTCGGCCTGGTTGTTGAGCCGGTGGTGGACGACTGCACCCACGGCTAGTGGTCCAGCATCTCCGCAGAGGAAAGTGACGCGGCGGCCGTTCAGGTTCCGCAGGGTGCGCTTGACGTAATCGAGGGAACGCTGAAGATGAGCAGCCTCGTTGCTCACGCGATGCAGCTGCAGATACAGCAAGGCAAtacCTGTCCAGCCTGTGTAGGTGGAGAAGTCGTGGGGGTCTGCAGTCTTTAGCCCTTCCTCCATCTGCTGGAGAAGATCTTTAATCTTGTTCTGTACTTTCTTCTGAAACGCCTCACTGATCTTTCCGCTCCCGTCGAAAGTTTCTCCGCTGCCGCCGCCGTTCGCCCCGGAGCCCGAGGACACGAGCACGCCCTGCTCCCAGTCCGGGAACGGGTTCGGGAACGAGCGCTCCTCCATCTCCGACTCGGAGGACGTGACGAGTTTCAGCCGCTTTGACATGTTGTCGCCCATTTCGACGGCGCCGCGCCGGGGCCAAACTTGAGCGGCCTGAGAAAACGCGTTTTTTCTGTCTCCCGTAGAGAAACCAGTCGCTCCTGATGCGGCTTGATAATGCTAAAAACAGTCTGTGGGGTCAGTTT

Function

symbol description
lancl2 Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in plasma membrane. Orthologous to human LANCL2 (LanC like 2).

NR:

description
PREDICTED: lanC-like protein 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119464 True 1528 lncRNA 0.52 7 7352453 7395810

Neighbor

gene id symbol gene type direction distance location
vopp1 vopp1,LOC107728740,LOC107757191 coding upstream 25705 7268729 ~ 7326748 (+)
LOC103044377 napg,LOC108271818,LOC108431250,LOC105890170,LOC107734322,LOC106590336 coding upstream 1351305 5992126 ~ 6001148 (+)
LOC103043891 LOC103043891,LOC108431261,LOC107655697,LOC107653805,LOC107566917,LOC107714010,LOC108271824 coding upstream 1363955 5929824 ~ 5988498 (+)
LOC103042448 NA coding upstream 1425998 5875704 ~ 5926455 (+)
itgb1 itgb1,itgb1a,LOC107566918,LOC107565694,LOC107653806 coding upstream 1477729 5831833 ~ 5874724 (+)
LOC111193320 NA coding downstream 332729 7728539 ~ 7735786 (+)
vps16 vps16,LOC107705536,LOC106592068,LOC107706675 coding downstream 368067 7763877 ~ 7785181 (+)
rgn rgn,LOC108430038 coding downstream 390512 7786322 ~ 7796482 (+)
LOC103027817 NA coding downstream 401523 7797333 ~ 7803815 (+)
LOC111193321 LOC107584855 coding downstream 413206 7809016 ~ 7817569 (+)
G88798 NA non-coding upstream 14761 7283189 ~ 7337692 (+)
G88768 NA non-coding upstream 181041 7171183 ~ 7171412 (+)
G88761 NA non-coding upstream 233826 7114543 ~ 7118627 (+)
G88752 NA non-coding upstream 308589 7043453 ~ 7043864 (+)
G88750 NA non-coding upstream 310941 7041094 ~ 7041512 (+)
G88801 NA non-coding downstream 30213 7426023 ~ 7477250 (+)
G88867 NA non-coding downstream 273445 7669255 ~ 7714191 (+)
G88886 NA non-coding downstream 343611 7739421 ~ 7740934 (+)
G88906 NA non-coding downstream 459059 7854869 ~ 7855150 (+)
G88908 NA non-coding downstream 461571 7857381 ~ 7857621 (+)
trnap-agg_3 NA other upstream 109476 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 1889428 4911656 ~ 5463025 (+)
G88486 NA other upstream 2545780 4796822 ~ 4806673 (+)
G88473 NA other upstream 2671616 4680113 ~ 4680837 (+)
G88849 NA other downstream 182800 7578610 ~ 7579960 (+)
LOC111193322 NA other downstream 681287 8077097 ~ 8080028 (+)
sumo1 NA other downstream 846509 8242319 ~ 8249434 (+)
G89453 NA other downstream 2206961 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 2579387 9975197 ~ 10000914 (+)

Expression


Co-expression Network