G88886


Basic Information

Item Value
gene id G88886
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7739421 ~ 7740934 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU119557
TGGACCAGTGCCTAGGATTATCCCAGGTCCAGCTGCACAGGCTGTGGCTGACTTGGAGGACGACAGTGGAGAGGAGGAGTTCCTGGAGCAAGCTCCTATAACACAGTGGGAGGAAGCAGAGGTAGCGTCCCTTACCGCCACCTTCCACTCAGAGACATCCAGCCAGTCAGGTATCGATGTCCTGGTGCTGGATGCAGAGGCGGATCCCTCTCACAGGCTGGACACCAACAGCACCGAGCCTGAGTCTGAGCCAGTGCCAGTTGCACAGGCTGAGGGGGATCTGGAGAGCAGCATGGAGGTCATGGTGGAGAGCATAGAAACAGCTCCCCAAAAACAAGAGAGGATGGCTACAGCGCTGTCTGAGACTCTGGAGGAGCACAGCCTCTACCTTACTTTCCTGCTGTCCTTACAGGGTAAATAGACATAACAAAAAATGGAGAGGATAGATAAATGGACAGATCAATATAAAGGGGGAGGACAGATCAATATAAAGGGGGGGACAGATCAgtagaaagggggaggacagATCAGTAGAAAGCGGGAGGACAGATCAGTAGAAAGGGAGAggacagatcaatagaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119557 True 584 lncRNA 0.53 6 7739421 7740934

Neighbor

gene id symbol gene type direction distance location
LOC111193320 NA coding upstream 3635 7728539 ~ 7735786 (+)
vopp1 vopp1,LOC107728740,LOC107757191 coding upstream 412673 7268729 ~ 7326748 (+)
LOC103044377 napg,LOC108271818,LOC108431250,LOC105890170,LOC107734322,LOC106590336 coding upstream 1738273 5992126 ~ 6001148 (+)
LOC103043891 LOC103043891,LOC108431261,LOC107655697,LOC107653805,LOC107566917,LOC107714010,LOC108271824 coding upstream 1750923 5929824 ~ 5988498 (+)
LOC103042448 NA coding upstream 1812966 5875704 ~ 5926455 (+)
vps16 vps16,LOC107705536,LOC106592068,LOC107706675 coding downstream 22943 7763877 ~ 7785181 (+)
rgn rgn,LOC108430038 coding downstream 45388 7786322 ~ 7796482 (+)
LOC103027817 NA coding downstream 56399 7797333 ~ 7803815 (+)
LOC111193321 LOC107584855 coding downstream 68082 7809016 ~ 7817569 (+)
LOC103042672 zgc:112392,LOC108430045,LOC108272735,LOC107705522,LOC107584803,LOC107581439,LOC106575771,LOC106574874 coding downstream 78097 7819031 ~ 7828733 (+)
G88867 NA non-coding upstream 25230 7669255 ~ 7714191 (+)
G88801 NA non-coding upstream 262171 7426023 ~ 7477250 (+)
G88799 lancl2 non-coding upstream 343611 7352453 ~ 7395810 (+)
G88798 NA non-coding upstream 401729 7283189 ~ 7337692 (+)
G88768 NA non-coding upstream 568009 7171183 ~ 7171412 (+)
G88906 NA non-coding downstream 113935 7854869 ~ 7855150 (+)
G88908 NA non-coding downstream 116447 7857381 ~ 7857621 (+)
G88917 NA non-coding downstream 128842 7869776 ~ 7871020 (+)
G88919 NA non-coding downstream 132143 7873077 ~ 7873431 (+)
G88976 NA non-coding downstream 334547 8075481 ~ 8075694 (+)
G88849 NA other upstream 159461 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 496444 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 2276396 4911656 ~ 5463025 (+)
G88486 NA other upstream 2932748 4796822 ~ 4806673 (+)
G88473 NA other upstream 3058584 4680113 ~ 4680837 (+)
LOC111193322 NA other downstream 336163 8077097 ~ 8080028 (+)
sumo1 NA other downstream 501385 8242319 ~ 8249434 (+)
G89453 NA other downstream 1861837 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 2234263 9975197 ~ 10000914 (+)
G89805 NA other downstream 2944723 10685657 ~ 10686056 (+)

Expression


Co-expression Network