G88906


Basic Information

Item Value
gene id G88906
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7854869 ~ 7855150 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU119583
tgcggtgcgccttatagtctgtaaattATGTACTTATTCTCTACATTAATTATTATCACTTTGGTTAAAATCAGTACAAATGGTCCTCTGCTGCACCAGAAATTCCAACCCAAAGTAAACAAATATGGCCCCCTCCTTGTACTTGCACAAAATAAGATGGATTCTAATtacacatttagctagctaggtgcAATTTTAGTGTTAGATATCCTTCAGTTTACCTATTGTACCTAGCTACTTAACTTACACCGTTACAATTACACTAGCTACCTAAGTTACACA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0030001 metal ion transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119583 True 282 lncRNA 0.36 1 7854869 7855150

Neighbor

gene id symbol gene type direction distance location
LOC103033509 tbx19,LOC108430034,LOC108272403,LOC107677559,LOC107660020,LOC107581437 coding upstream 1875 7832372 ~ 7852994 (+)
LOC103042672 zgc:112392,LOC108430045,LOC108272735,LOC107705522,LOC107584803,LOC107581439,LOC106575771,LOC106574874 coding upstream 26136 7819031 ~ 7828733 (+)
LOC111193321 LOC107584855 coding upstream 37300 7809016 ~ 7817569 (+)
LOC103027817 NA coding upstream 51054 7797333 ~ 7803815 (+)
rgn rgn,LOC108430038 coding upstream 58387 7786322 ~ 7796482 (+)
LOC103032863 kalrn,kalrnb,LOC107706669,LOC107581345,LOC107705539,LOC108272447,LOC107677582,LOC107659990 coding downstream 41140 7896290 ~ 8069115 (+)
LOC103024957 LOC108429998 coding downstream 362971 8218121 ~ 8222533 (+)
als2 als2 coding downstream 502592 8357742 ~ 8413424 (+)
mpp4 mpp4 coding downstream 564510 8419660 ~ 8441137 (+)
LOC103023480 tmem237 coding downstream 586972 8442122 ~ 8459166 (+)
G88886 NA non-coding upstream 113935 7739421 ~ 7740934 (+)
G88867 NA non-coding upstream 140678 7669255 ~ 7714191 (+)
G88801 NA non-coding upstream 377619 7426023 ~ 7477250 (+)
G88799 lancl2 non-coding upstream 459059 7352453 ~ 7395810 (+)
G88798 NA non-coding upstream 517177 7283189 ~ 7337692 (+)
G88908 NA non-coding downstream 2231 7857381 ~ 7857621 (+)
G88917 NA non-coding downstream 14626 7869776 ~ 7871020 (+)
G88919 NA non-coding downstream 17927 7873077 ~ 7873431 (+)
G88976 NA non-coding downstream 220331 8075481 ~ 8075694 (+)
G88977 NA non-coding downstream 226911 8082061 ~ 8085861 (+)
G88849 NA other upstream 274909 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 611892 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 2391844 4911656 ~ 5463025 (+)
G88486 NA other upstream 3048196 4796822 ~ 4806673 (+)
G88473 NA other upstream 3174032 4680113 ~ 4680837 (+)
LOC111193322 NA other downstream 221947 8077097 ~ 8080028 (+)
sumo1 NA other downstream 387169 8242319 ~ 8249434 (+)
G89453 NA other downstream 1747621 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 2120047 9975197 ~ 10000914 (+)
G89805 NA other downstream 2830507 10685657 ~ 10686056 (+)

Expression


Co-expression Network