LOC103024957 (LOC108429998)


Basic Information

Item Value
gene id LOC103024957
gene name LOC108429998
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8218121 ~ 8222533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248876.3
TGTCCGCAAGGGCCAGCGGGGCCAAGGCTACGTCTGGGATGGGCCTGCAGCTGCAGAGGGGCTCTTGTACTTTTCCCAAAGCCTCCTCCTCCAGcgctccatccctccatcctgcCCGGGGACACCCTGCAACTCCCCTGAGCTTTTGCTCCCTTTGGCAGTGAGCACCCGGGGGAGGCAGGGTGGGAAGATAACGGACCCACTTGAAGATCCCCACATTACCTCACTAGATAAGGCAAAAGGGAGGGAGTTTGAGCGTGGCGGAGAAGAAGGAGCAAAGCCCCCCATATACACACTTCATTCGTGATACCCCCAGGCGCTGCCACAGAGAGACTGCTTCGGTGTTGGTGGCTCCCCAATGGCGAACCAGGCGCTGGCGGAGGAGGCTTTTTCAGAAGAGCAGGGAGAGATGGGAGGGAGAGGTCTTCACCAGACTCTGCAGTGGACACAGCCATGCGTGAGACAAGCGGCGCACAGAGAGCCGAGGAAGTGGACCAGGCCTACAGCCGCAGTGCAGAGCAGGTCACAAAAGGTGCAGAATTCCCCTGAAAATGCAGCCAGGGAGAGAAGTCGTGTCCGGAACCTTCGGCAGGCCTTCCAGAGCCTCCAGGCTGCACTGCCATCCGTTCCTCCAGACACAAAACTCTCGAAGCTGGACGTTCTGGTCCTGGCAACCAACTACATCGCTCACCTGACCGAGACTCTGGACCAGGGAGGACGGCTGTGTGATCATCCTGCACTGCAGAGAGCTGAGGGCTACCTGCACCCTGTGAAGaaatggCCAATGCGCTCTCTGCTGTACTGTGGAAGTATGGGAGAGAGATTGACGGCAGCACCCACCAATCAGGAGGAGGCCCATCCACCTGGGAGTTCAGCAGAGGTCAACACAGACTGAGCTTAAAGAGATGGCTCATGTTACAATACATGAAATCCATATCTAATATCTACGTGTGTTTAAGTAATGAGAAAGCTGACCAATGGACAGattcatttgtgaataatatctATTTTGTCTGATTAAATTgacgttttattttttca

Function

NR:

description
PREDICTED: transcription factor 23-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248876.3 True 1041 mRNA 0.55 3 8218121 8222533

Neighbor

gene id symbol gene type direction distance location
LOC103032863 kalrn,kalrnb,LOC107706669,LOC107581345,LOC107705539,LOC108272447,LOC107677582,LOC107659990 coding upstream 149006 7896290 ~ 8069115 (+)
LOC103033509 tbx19,LOC108430034,LOC108272403,LOC107677559,LOC107660020,LOC107581437 coding upstream 365127 7832372 ~ 7852994 (+)
LOC103042672 zgc:112392,LOC108430045,LOC108272735,LOC107705522,LOC107584803,LOC107581439,LOC106575771,LOC106574874 coding upstream 389388 7819031 ~ 7828733 (+)
LOC111193321 LOC107584855 coding upstream 400552 7809016 ~ 7817569 (+)
LOC103027817 NA coding upstream 414306 7797333 ~ 7803815 (+)
als2 als2 coding downstream 135209 8357742 ~ 8413424 (+)
mpp4 mpp4 coding downstream 197127 8419660 ~ 8441137 (+)
LOC103023480 tmem237 coding downstream 219589 8442122 ~ 8459166 (+)
LOC103022662 cyp20a1,LOC103022662,LOC108430007,LOC108272693,LOC107660127,LOC107677549,LOC107706624 coding downstream 257256 8479789 ~ 8489276 (+)
LOC103021515 abi2,abi2b,LOC107706652,LOC107584785 coding downstream 268878 8491411 ~ 8519974 (+)
G89051 NA non-coding upstream 10131 8200777 ~ 8207990 (+)
G88990 NA non-coding upstream 49691 8116360 ~ 8168430 (+)
G88998 LOC107584837 non-coding upstream 59698 8155702 ~ 8158423 (+)
G88991 NA non-coding upstream 97689 8117875 ~ 8120432 (+)
G88981 NA non-coding upstream 115318 8101895 ~ 8102803 (+)
G89076 NA non-coding downstream 59146 8281679 ~ 8281970 (+)
G89079 NA non-coding downstream 72430 8294963 ~ 8297376 (+)
G89102 itm2b,LOC108430053 non-coding downstream 279167 8501700 ~ 8580540 (+)
G89189 NA non-coding downstream 360732 8583265 ~ 8583511 (+)
G89209 NA non-coding downstream 420301 8642834 ~ 8643133 (+)
LOC111193322 NA other upstream 138093 8077097 ~ 8080028 (+)
G88849 NA other upstream 638161 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 975144 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 2755096 4911656 ~ 5463025 (+)
G88486 NA other upstream 3411448 4796822 ~ 4806673 (+)
sumo1 NA other downstream 19786 8242319 ~ 8249434 (+)
G89453 NA other downstream 1380238 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 1752664 9975197 ~ 10000914 (+)
G89805 NA other downstream 2463124 10685657 ~ 10686056 (+)
G89806 NA other downstream 2465733 10688266 ~ 10688820 (+)

Expression


Co-expression Network