LOC103023480 (tmem237)


Basic Information

Item Value
gene id LOC103023480
gene name tmem237
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8442122 ~ 8459166 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007248871.3
tgattgaCCATCAGCACCAGAAAAAACACATTGGTTGACCAGCAAGATTAAGCATGAAGGATTAAATGCAACATTTAACATACCCTAGTAAAGAGCTGTTTACACATGGAATGACCAGCATTAAACTAACTAAACAATTGTGCCATTATGCTCTGATAAGCATAAATATAGttctaacaaaataaatattcgTGTGCGCATTTATTAGAAGCTTTACGTTAAATGTCTCCCCGTGTGCGCAAATACTACAAGAAATGTGTCAGTGGGGCAGAGGCTTGTATCCAACGACAACAAATAACGCTGAACGCCTTATGAGCCAGCTAGCACTGATATTTACTGAGAAATCTTTTAGATTCTTCTCTACTTAAAATTTGAAGGCTTTAAGCTAACCCTACCTAAAAGCTGAGCTTATTTAGAGGAGTACAGCATGGACACAGACATCCTGAAGgctCAGAGCACAAGACGAAGAGATCTTCCCCCACTTTCACATcgAGGTCCACGTGCATTACCATCTCTGCCAAGTCAAGACACAGCAGATGAGATGCCAATTCCAAGGGCCAAGAAGAAGAAGCCCAAGCGGGAAGTGGACACAGAGGGAGTCGAGGGTCCTGAGGGAGATGCTGGGATGGAGATGGGGGACCTGGACAGTCACCGGCAGTCAGAGAGCCAGGAGCGCTTATCCCCCGAACCTCAGGAAAACCCACCgcagaggaagaaaaagaagaagaaagcccAAATTATCGATCCAGAAGGTGACCAGACTGACCTGGTGCAGAACGGAGACATGCCTGACCAGAACACAGACGAGGAACCCACACGAAAACCCAAGAAGAGGAAAGTGAAACCCAAAGTGGCAGACATGCAGTTAAATAACGAGTTAGCCGTCGAAGATGATGACATCATCACGGACGCCCAGCCCCCTATTCCTCAGCATGCTCTGTTCTCGGCCCCTCACGGTCAGAGTCAGCCCGTGGCCAAGGTGTTCATTGAGAGAGGACgtCGTTTTCAGCCAGCTGAACGAATAGACATGCGCAAGACCAGCGATCAGCCTGAACAGAACTTTATGGACCTTCATTCGATGTGGACCACCAGAGACGTGTCCATGAGAGTGCACCGCGGCTTCAGGGTGATAGGCTTGTTCTCTCATGGGTTCCTGGCTGGTTACGCTGTATGGAATATCATTGTGATGTACATTTTGGCCGGGGAACAGATGAGCACTCTACCTAACTTACTGCAGCAGTACCACACACTGGCTTACCCTGCACAGTCCCTCTTCTACTTCCTGCTGGCTCTTAGCACTGTTTCAGCCTTCGACAGAGTGAACCTGGCCAAAGCGTCTGTGGCTTTGAGGAGCTTTCTCACTCTGGATCCAGTGGCGCTCGCCTCTTTCTTGTATTTCTCAGCCTTGGTCCTGTCTCTAAGTCAGCAGATGACCAGTGATCGCATCAATCTCTACTCTAACATCAACGCTTCACTATGGCTGCCTGAGTCTGAACACAGTTCACTCTACCCCTGGATCATAGTGAATCTGGTGGTCACCTTGTTGGTGGGCTTGGCCTGGGTGTTGGTGTCAACCTCTCCAGATGTAGATTACACAGAAGAATTCCTGATGGCGATGGAGATTGAATATCCCAGAGCTGAGGAGAAAGACATCACTGCCTGAGATGAAGCTGCTTAAAAAAATTTACTgtgggcctttttttttttgtttattttgaacACTCGTACAGTGTATTGCTGTAAATAAAGCTTATAGgatgattttaaata

Function

symbol description
tmem237 Involved in cilium assembly and regulation of Wnt signaling pathway. Located in ciliary transition zone. Implicated in Joubert syndrome and Joubert syndrome 14.

NR:

description
transmembrane protein 237B

GO:

id name namespace
GO:0030111 regulation of Wnt signaling pathway biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0035869 ciliary transition zone cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007248871.3 True 1770 mRNA 0.47 14 8442122 8459166

Neighbor

gene id symbol gene type direction distance location
mpp4 mpp4 coding upstream 985 8419660 ~ 8441137 (+)
als2 als2 coding upstream 28698 8357742 ~ 8413424 (+)
LOC103024957 LOC108429998 coding upstream 219589 8218121 ~ 8222533 (+)
LOC103032863 kalrn,kalrnb,LOC107706669,LOC107581345,LOC107705539,LOC108272447,LOC107677582,LOC107659990 coding upstream 373007 7896290 ~ 8069115 (+)
LOC103033509 tbx19,LOC108430034,LOC108272403,LOC107677559,LOC107660020,LOC107581437 coding upstream 589128 7832372 ~ 7852994 (+)
LOC103022662 cyp20a1,LOC103022662,LOC108430007,LOC108272693,LOC107660127,LOC107677549,LOC107706624 coding downstream 20623 8479789 ~ 8489276 (+)
LOC103021515 abi2,abi2b,LOC107706652,LOC107584785 coding downstream 32245 8491411 ~ 8519974 (+)
sucla2 sucla2,LOC107705569,LOC107677548,LOC107706648,LOC107581356 coding downstream 88977 8548143 ~ 8574244 (+)
LOC103031921 NA coding downstream 142981 8602147 ~ 8629344 (+)
LOC103031605 LOC108430056 coding downstream 187153 8646319 ~ 8682941 (+)
G89079 NA non-coding upstream 144746 8294963 ~ 8297376 (+)
G89076 NA non-coding upstream 160152 8281679 ~ 8281970 (+)
G89051 NA non-coding upstream 234132 8200777 ~ 8207990 (+)
G88998 LOC107584837 non-coding upstream 283699 8155702 ~ 8158423 (+)
G88991 NA non-coding upstream 321690 8117875 ~ 8120432 (+)
G89102 itm2b,LOC108430053 non-coding downstream 42534 8501700 ~ 8580540 (+)
G89189 NA non-coding downstream 124099 8583265 ~ 8583511 (+)
G89209 NA non-coding downstream 183668 8642834 ~ 8643133 (+)
G89214 NA non-coding downstream 227024 8686190 ~ 8692877 (+)
G89218 NA non-coding downstream 278408 8737574 ~ 8739727 (+)
sumo1 NA other upstream 192688 8242319 ~ 8249434 (+)
LOC111193322 NA other upstream 362094 8077097 ~ 8080028 (+)
G88849 NA other upstream 862162 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 1199145 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 2979097 4911656 ~ 5463025 (+)
G89453 NA other downstream 1143605 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 1516031 9975197 ~ 10000914 (+)
G89805 NA other downstream 2226491 10685657 ~ 10686056 (+)
G89806 NA other downstream 2229100 10688266 ~ 10688820 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other downstream 2320936 10780102 ~ 10791128 (+)

Expression


Co-expression Network