G89218


Basic Information

Item Value
gene id G89218
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8737574 ~ 8739727 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU119994
tgtataaaagggCTGCATGGCTGATTTCATGTCTGATTTCATGTCTGATAAGCGTAAGGTGATATCAGATTTATGCTGCTTTCCATTTACTTTGGATGTCGGAACTAGAGTTCTGTGGTCCAGTTAAAAATTCAGATATCAGCtatcactgttagcattgtcccaggttagcattgctagAGACTCAAGGGGGGCGGGGTGGTAAGAGAGGGCAACCACCTCTCTTGGTGCccacatgtttaaaaaagtatctGCCTATTGTTATCTACACATGAAAACATGCCCATAGATAGAAGTTGAACAGTACTGTGTATGTGACTGATTTAATGGGACACTAATAAAGAGATAGCGCTAAATGATAAACTGTGTAATACTGCTGCGTTTACTACTGTTGGTTACTATGCAGCCATTTTGGATTCTAAATTCAAAATTTCCTGCTTGGAACTAGGAAATTCTGACATCCGAACTCAAATGGAAGACAGCATCAATCAATcgataaatcaatcaatcaatcaatcaatcaatcaatcaatcatcatcatcatcgtcataaTATCTGTTCCTTTTAATTTGCTCCTCCACAGTCAATGATTCCAGTTCCTTTCCCCACTGAAGGAGGCTGGCTCCAGCTGGCAAGCTGGCATCTTTGGTGTCAGAAATATCGAGCCTCCCCCTGTTTCTTTTCTCCGCACTCTGCTTGTCTGCCACCTCTCCTGTCTCCATTCCAAAATCCATAAGATCGTCCAGCAGAGAGACTGCTGATTTGGTGCTGGATTCTTTGGTGTAAAAGTCCTCCTTTAGATCCAACAGCAGTCCAGAACTGTCCCCAAAGCCGGCGAATATATCGTCGAGGAACTGCGAGGCACTAAACTTTGACTCTTTGTGTGGATTCTCATTATGAGGCAGATCTTTTCCACACTGATCCTGCGGTTTTGATGCTTCTGATGCCTCGTCTGTCCTGTTGGCACTTAGAGGTTGAGCAGGTTGATCAGTTATGACCAGTTCGTCCGGCTGGAGTAACTGTACAATGTCTTCTGTAGCGGgccttatttcttttttggtgTTGTTTACCGAAGAAACTTCAGTTACCTGAGAAGAAGGTGGTGCAGATGAAGTGAGATCTAGTAGATCCACCCATGTGGCATGTAACAGGTTGTTGttactgttgttgttgttgttgttgttattattgctGTTATTGCTGTTGTGAACAATTCCATTGGCGGTCTCATCGTCTTTGGCTTCATTGTCGATCAAAGTCACCTTTACTTCACCTGCATCTCTATTTCCATCACTTTCTTTCTTAACCTTTTCCACATTCTCCTCCACACTCTCTTCCTTTATTTCTGTACTGTTCACTTGTTCCTCAGCCGTCACCTCTTCTTTTTCCAcattctgctgctccatgcctTTCTCTCCATTCATCTTCATCTCTGAAACTTCTTTTTTCTCATCTTTTACTTCTTCTTTGCCTTCCACTTGCTGTACCTTCTCTGATTCCTCTGTGACTTTAGGTGCAACCTCCTGCAAGCTGCCTGCTGTAGTGGTGTCGTCAGTCTGCACCGCAGGCTGTACCACAGCAACAGGCTGCTCTGGGACCTTCTCTTCAGATTTAGCTGGTTCTGATGGTGCTATCCCTTGGTCACCACTTTGTTCCTTCTCCTTGAGTTTACTGGGTGATGTCCGTTCTCTCTGCGCTCGctccgtttttttattttttctcctgtgGTTCAGGCTCCTCTTTAGGGGGCCACGCAGGCTTGACAACAATTAGTTCCTCTTCCACACTAAAGCTCTTCTTTGGGGTCTCGTTTTGAGGTGGCCAAACAATCGCAATCTTACTCGCTGGCCTTTTGGCATTGATGTCCGACATACTCGAGTCTTTCTCCTCCGCTGGGAATAAGTCATGTTCTTTGGAGACATGCGACGCTTTGGTATCTGGTTTGACTGGAGAAGCATTTTTGGTATTAGTCttttctggtgtgttgggaTTTTTTCCACTCCAAAGCTCCCTGTGGGGCTTTTCTCCAAATCCTTCATCGTAGTTTCCTTTGGACTTGAAGAGCTGTTTGTAGTGGGGTTTGCAGTACATTCGTCCATGGAGAGAGGCAAAGTTTCCTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119994 True 2121 lncRNA 0.44 2 8737574 8739727

Neighbor

gene id symbol gene type direction distance location
LOC103031605 LOC108430056 coding upstream 54633 8646319 ~ 8682941 (+)
LOC103031921 NA coding upstream 108230 8602147 ~ 8629344 (+)
sucla2 sucla2,LOC107705569,LOC107677548,LOC107706648,LOC107581356 coding upstream 163330 8548143 ~ 8574244 (+)
LOC103021515 abi2,abi2b,LOC107706652,LOC107584785 coding upstream 217600 8491411 ~ 8519974 (+)
LOC103022662 cyp20a1,LOC103022662,LOC108430007,LOC108272693,LOC107660127,LOC107677549,LOC107706624 coding upstream 248298 8479789 ~ 8489276 (+)
LOC103044513 NA coding downstream 167252 8906979 ~ 8927787 (+)
LOC107197615 NA coding downstream 215214 8954941 ~ 8992223 (+)
LOC103039510 LOC108428931,LOC108268943 coding downstream 417340 9157067 ~ 9167205 (+)
LOC111193323 NA coding downstream 428333 9168060 ~ 9170541 (+)
LOC103041465 LOC108429001,LOC107751897 coding downstream 463700 9203427 ~ 9211836 (+)
G89214 NA non-coding upstream 44697 8686190 ~ 8692877 (+)
G89209 NA non-coding upstream 94441 8642834 ~ 8643133 (+)
G89189 NA non-coding upstream 154063 8583265 ~ 8583511 (+)
G89102 itm2b,LOC108430053 non-coding upstream 157034 8501700 ~ 8580540 (+)
G89079 NA non-coding upstream 440198 8294963 ~ 8297376 (+)
G89287 NA non-coding downstream 210241 8949968 ~ 8950260 (+)
G89343 cep192 non-coding downstream 440001 9179728 ~ 9181794 (+)
G89350 LOC103040854 non-coding downstream 458704 9198431 ~ 9199957 (+)
G89353 NA non-coding downstream 472449 9212176 ~ 9216001 (+)
G89355 NA non-coding downstream 478091 9217818 ~ 9218032 (+)
sumo1 NA other upstream 488140 8242319 ~ 8249434 (+)
LOC111193322 NA other upstream 657546 8077097 ~ 8080028 (+)
G88849 NA other upstream 1157614 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 1494597 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 3274549 4911656 ~ 5463025 (+)
G89453 NA other downstream 863044 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 1235470 9975197 ~ 10000914 (+)
G89805 NA other downstream 1945930 10685657 ~ 10686056 (+)
G89806 NA other downstream 1948539 10688266 ~ 10688820 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other downstream 2040375 10780102 ~ 10791128 (+)

Expression


Co-expression Network