G89350 (LOC103040854)


Basic Information

Item Value
gene id G89350
gene name LOC103040854
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9198431 ~ 9199957 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU120170
agacatttattcAACACACTTAAGAATTTTAAACTGTTACAATTGTTTCaccaacatttaaaacactttctaTAGTCAAATTCAATGTTGCCCTTCACTGTAAAATctaaacttggcaaaaacacaaagatAACCCAAGTGCATAGGACACAAACATTTTGAAGACTTTAACTACATCAGTACAATCCCTTTAAACCCTTAATATACACCTGTTTGAGAAATAATTGTATGGGCAACAGTTAATATAGTCAGTGTAACAGATGCCATAAGCGCACCAGGGCTTCCATTACAGTAGTCTTCTTCACAGCAGTTCTTGGTCATGGTGTACAGGGTTTTATTTGAACTGAACTCTATAGTGGTAGTCTTGTTGCAGTCTTTTACTGGAAGGCAGCCCATCACCTTTATATCTAGGACAGAGGCAATTCCAACAAAACATTGCTCCTCATAACTGCAGTTGGTTTTGGTAGTGTAGCACACATCCCAGAACCCAAGATCACACCGAAAGCACTCAAGAGTTTGTCCTGAGCAAGACAGGGCAACCAGCAGCACCACAACCAGAACCGAGCTGAACCCGCTCATGTTTACCGCGGTCTGGTTGTAAACAGGCGGGAGATGCAGTGCTGCTCTACGCTCACTGCCGCTTTACCTTATGTGGATTTCCTACACACGCTGCACCCAATCATGCGTGCTGTGCGACTCGTGGGATTGTC

Function

NR:

description
sperm acrosome membrane-associated protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU120170 True 710 lncRNA 0.43 3 9198431 9199957

Neighbor

gene id symbol gene type direction distance location
LOC111193323 NA coding upstream 27890 9168060 ~ 9170541 (+)
LOC103039510 LOC108428931,LOC108268943 coding upstream 31226 9157067 ~ 9167205 (+)
LOC107197615 NA coding upstream 206208 8954941 ~ 8992223 (+)
LOC103044513 NA coding upstream 270644 8906979 ~ 8927787 (+)
LOC103031605 LOC108430056 coding upstream 515490 8646319 ~ 8682941 (+)
LOC103041465 LOC108429001,LOC107751897 coding downstream 3470 9203427 ~ 9211836 (+)
cep76 cep76,LOC107684173 coding downstream 19783 9219740 ~ 9230171 (+)
id4 id4,LOC103041967 coding downstream 150494 9350451 ~ 9354496 (+)
LOC103042493 ncald,ncalda,LOC103042493,LOC108268956,LOC100692199,LOC105901278,LOC106931336 coding downstream 207974 9407931 ~ 9453824 (+)
LOC103043416 LOC108429005 coding downstream 262709 9462666 ~ 9478447 (+)
G89343 cep192 non-coding upstream 16637 9179728 ~ 9181794 (+)
G89287 NA non-coding upstream 248171 8949968 ~ 8950260 (+)
G89218 NA non-coding upstream 458704 8737574 ~ 8739727 (+)
G89214 NA non-coding upstream 505554 8686190 ~ 8692877 (+)
G89209 NA non-coding upstream 555298 8642834 ~ 8643133 (+)
G89353 NA non-coding downstream 12219 9212176 ~ 9216001 (+)
G89355 NA non-coding downstream 17861 9217818 ~ 9218032 (+)
G89377 NA non-coding downstream 47355 9247312 ~ 9266949 (+)
G89379 NA non-coding downstream 83620 9283577 ~ 9285115 (+)
G89386 NA non-coding downstream 143781 9343738 ~ 9344004 (+)
sumo1 NA other upstream 948997 8242319 ~ 8249434 (+)
LOC111193322 NA other upstream 1118403 8077097 ~ 8080028 (+)
G88849 NA other upstream 1618471 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 1955454 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 3735406 4911656 ~ 5463025 (+)
G89453 NA other downstream 402814 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 775240 9975197 ~ 10000914 (+)
G89805 NA other downstream 1485700 10685657 ~ 10686056 (+)
G89806 NA other downstream 1488309 10688266 ~ 10688820 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other downstream 1580145 10780102 ~ 10791128 (+)

Expression


Co-expression Network