LOC103043416 (LOC108429005)


Basic Information

Item Value
gene id LOC103043416
gene name LOC108429005
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9462666 ~ 9478447 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250452.3
TCCTGAAGGACCTCCTACACCTCTGATTCTCACCTGTTGAGAGATTACACTGTTACTCCAGCTCACTCATTCACACCCTCACCTTCTCACTCAGAGAGCTGAGCTGATATAtcttacatttttgttgttgtagttTTTATGTTAACTGTGCTCCACAGAGTCTGTGGTGAAGCTAAATTGgcttttattttgctttgtttatggCTGCAAGGTGCATTGACATCACACAGATGAGTGAAGTGAGCTAGGGGTTAAGGCAGAGCCCACCTTTCACTCTCCTGACCAGCAGTCACCTTCCTACAGGTTCCTGACCAGCTTCTGAGGAGAGAACCCAGGAGGACACGCAGCTGCTTCCATGGCTCAGGAGGAGGGTAAgcggctggtggtggtggtccCCAATGAGACGTCCTTTCCATCACGTCGTGTCTATACCAGTGAAGATGAGGCCTGGAGGGCCTACCTAGAGAATCCTCTGACTGCAGTCACCAAGGCTATGATGAGCATCAATGGAGATGAGGACAGTGTGGCAGCTCTTGGTCTGCTCTACGACTACTACAAGGTTCCTAAAGAAAAGAGAGTTCTGCCTGTAGCTAAAATCCCAGAGGAAGACAAGAGGTTATGGCATGGAGATGTGGACTCAGTGGAGGAACGTGTTCAGGCTGCCAAATCTGTGCCAGTCAACCTGTCCCTCAACGCAGACTCCCACAGCACAGAGATGAAGAGAAATTTATACAGCACACTGCCAGCTGAGGGGGGAGTAGTGGCTCCTGTAAAACCAGAGTATTCAGCACTGTCCACTTCTAACCAGCAGCAAGAGGAACAGCCACACCACCGCTTACCTTATCAGCAAACCAGTCATGAGGCGAGGACCATCACCCATAGCCGTTACATGAAGGATGAACAGAGGAGCGTGCCGGATAGCACCTTTGAAGACTCTTACACTGGAGAGAATGTGAAATTCAGAGTACCAACATCCCTAGCATCCCAAAACACCCTCTATCAACAGCCTCCAGTAGACACCTTCCAGTACAGTATAGAAGCGAGCCGATCTGTGCGCCAGAAGCAGGGTGAGGGGCCAATGATCTATCTGAACAGAGGGCAGTACTACAGCATCACTCTGAGTGAGTCGGGGGCAAGCAAGGGTCTGCGTCTTCCCATCAGCAAAGTGCGGAGTGTGGTGATGGTGGTTTTTGGAGAGGATAAGTGTCGAGACGAGCAACTGAAGCACTGGAACTACTGGCACAACCGTCAGCACACTGCTAAACAAAGAGTGCTGGACATTGCTGACTACAAGGAAAGCTTCAATACCATTGGGAATCTTGAGGAAATCGCCTACAATGCTGTCTCTTTCACCTGGGATGTTACAGAGGAAGCTAAGGTGTTTATCACAGTGAACTGTCTGAGCACAGACTTCTCCTCTCAGAAGGGAGTGAAAGGGCTTCCGCTGATGATTCAGATCGACACTTACAGCTACAATAACAGGAGCAACAAGCCTATTCACAGAGCCTACTGCCAGATCAAGGTCTTCTGTGACAAGGGGGCTGAGCGTAAAATCAGGGATGAAGAGAAAAAGCAAATCCGGAAGAAGGTGAAGGGTCATACACCTGGAGGGCACGGTCATAGTGGTGGAGACTTGGCAGGAAAAGCAGGAGCGTATGGAGCAGCACTGCAGAGGAAGTCAGACATCACGCTTTTCAAATCCATGATGGATCTGGAGTCCCAGCCTGTGCTTTTCATCCCTGATGTCCACTTCAGTAACCTACAAAGAGCTGCACAGATGTTTGGTTTTGGTACTGAAGAAGCGGAGAGTGATGGCGTGGTAATGAAGAGGCCATTAAGAGACACAGAAGACGATATCTGCCCTTCCCCAGCCAAGCAGAGTAAAGGAAACACACCAAGGAGAGTTCTGCTGTATGTTAGGAAAGAAGCTGATGAGGTTTTTGATGCATTAATGCTGAAGTCTCCAACAGTGAAAAGTCTGCTTGAGGCTATATCAGGCAAATATTCTCTTCCAGCTGAGAGGATAACTAAAATCTACAAGAAAAGTAAGAAAGGGATTCTTGTCAACATGGATGATAACATCATTGAGCACTACTCCAATGAGGATGCCTTCATACTTAACATTGACCCTCAGACAGAATGCTTTCACGTCACACTTACAGAGATATAATGAACATCCCGATTATGATGAATTAATTGCCCATGTCTGCTGAATGTTATACCAGCCCTGTCCTAAGCCCAGTCTCAATTTTCTCACCACTCAGAGCAGCACGTCTTGAAGTAGATTCTGTAAAAGGACAACACTGAAAAGATACAGGATTATTTCAAATGCACTCTTAACTAATGTGTGATTGCACTAGCATAGGATGACAAATGcctctttattttgttttttggttttgctgttttttaagcTCCCTCTCCTGCTCAGTGGTTAAGCAGCAAGAATTAGGTCTGCAACAAGTTCCTACAAAAGAGTTGTTCCCAATAAGTTCTGCTTCATCATTATGAATACTGGGCATCGAGTGGCATGCAGATTTAGAGCACCCCGATAAAAATGTGTTACTGTGAATAGTAAAGCAAGTATAAGGTGAGCTGATTTCCAGGAGGCATAATGTTGAAGATGCAACAGTTCTTTTGTATTGTAAACATTATtaattgaaacattttaaagtttaaaaaataacaaaaaagaaaaagagacagaaaagcaCCAAGTGCATCTCTTTCTGAAGGTTTCTGGATTTACTTTTCTAGTAATATAAGATGTTCTCTAGGAACATTCTCTTGGTTTTCCACTCTTCAGCTCCTCCACCACAGTTCCTGTTAACTGCCATTTcgtaataatgataaaaactgAGGAAACATCTTTAATGATGTACTGGATGTGTATATagattgtgtttttaatgtacaTGTTTTAATGAGTAATTTTCAGTtgatgtaaatatgttttttaataaatgtaataaactcataagcatctttttcatttaa

Function

NR:

description
PREDICTED: grainyhead-like protein 2 homolog isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250452.3 True 2997 mRNA 0.44 16 9462666 9478447

Neighbor

gene id symbol gene type direction distance location
LOC103042493 ncald,ncalda,LOC103042493,LOC108268956,LOC100692199,LOC105901278,LOC106931336 coding upstream 8842 9407931 ~ 9453824 (+)
id4 id4,LOC103041967 coding upstream 108170 9350451 ~ 9354496 (+)
cep76 cep76,LOC107684173 coding upstream 232495 9219740 ~ 9230171 (+)
LOC103041465 LOC108429001,LOC107751897 coding upstream 250830 9203427 ~ 9211836 (+)
LOC111193323 NA coding upstream 292125 9168060 ~ 9170541 (+)
LOC103043727 LOC108429009 coding downstream 864 9479311 ~ 9489659 (+)
LOC103033624 NA coding downstream 149653 9628100 ~ 9634429 (+)
LOC103041564 LOC103041564,LOC108428935,LOC107684163,LOC107748751,LOC107596677 coding downstream 163740 9642187 ~ 9644541 (+)
LOC103033304 NA coding downstream 167172 9645619 ~ 9667731 (+)
m6pr NA coding downstream 227216 9705663 ~ 9714894 (+)
G89386 NA non-coding upstream 118662 9343738 ~ 9344004 (+)
G89379 NA non-coding upstream 177551 9283577 ~ 9285115 (+)
G89377 NA non-coding upstream 195717 9247312 ~ 9266949 (+)
G89355 NA non-coding upstream 244634 9217818 ~ 9218032 (+)
G89353 NA non-coding upstream 246665 9212176 ~ 9216001 (+)
G89429 LOC108429011,LOC108268485,LOC101064094,LOC107741984,LOC107684166 non-coding downstream 34660 9513107 ~ 9514687 (+)
G89436 NA non-coding downstream 55195 9533642 ~ 9534283 (+)
G89454 NA non-coding downstream 125199 9603646 ~ 9608487 (+)
G89455 NA non-coding downstream 134275 9612722 ~ 9612980 (+)
G89492 LOC108429024 non-coding downstream 314235 9792682 ~ 9793009 (+)
sumo1 NA other upstream 1213232 8242319 ~ 8249434 (+)
LOC111193322 NA other upstream 1382638 8077097 ~ 8080028 (+)
G88849 NA other upstream 1882706 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 2219689 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 3999641 4911656 ~ 5463025 (+)
G89453 NA other downstream 124324 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 496750 9975197 ~ 10000914 (+)
G89805 NA other downstream 1207210 10685657 ~ 10686056 (+)
G89806 NA other downstream 1209819 10688266 ~ 10688820 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other downstream 1301655 10780102 ~ 10791128 (+)

Expression


Co-expression Network