LOC103041465 (LOC108429001,LOC107751897)


Basic Information

Item Value
gene id LOC103041465
gene name LOC108429001,LOC107751897
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 9203427 ~ 9211836 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250446.3
AAGGGGCGGCGCTTCGAGCTGAAGCTACGGAAGCAGCTCCGGTGGACGAGAGCTCAGCTCAGTCGCGTTTTATCCTCTTTGACCAGGACGAGTTAGCTAAACGCAGCAATGCGCGGTCTGTCCTGCTGCTTTAACACCGCGGACAGCTCTAAAGACATGATTACTCCCGGGTCCTGCGCGTTGAGCGGAATCTGATCTCGGCTAGTCTTTGTGAATAACTGATTAATCTGAGTAAAATGGATCAGGAGGAGTTCGAGGACATAGATTCACCTGGACAGTGGCAGAACCTCTATAACGAAATCCGTAACCAGTCTCAGGAGTGTTCCTTTAAAGTGGCAAAGTTCCCAGAAAACCGAAACAGGAACAGATACAGAGATGTCAGCCCTTaTGATCACAGCCGGGTGCGATTGGAAAATTCTGAAAATGACTACATAAATGCAAGCCTAATAAATGTGGATGATGCCCAAAGAAGCTACATACTTACACAGGGACCCTTGAGAAATACTTGTGGTCACTTCTGGTTAATGATCTGGGAGCAGCGATCCAAAGCTGTCATCATGCTCAACAGAGTGGTAGAAAAAGGAGCTGAGAAGTGTGCACAGTACTGGCCATCAAACGAGGAGAGACAAATGGATTTCAGTGACACAGGGTTTGTGGTGACTCTAGTGTCAGAAGATGACAAATCTTATTACACGATAAGAGTGCTCAAGCTTCAAAATAGCAAAACAGGAGAGATCAGAGATATCTACCACTTTCATTACACCACATGGCCTGATTTTGGCGTGCCAGAGTCCCCAGCGtcttttctcaactttttattCAAGGTCAGAGAGTCAGGTTCATTGGAGCCTGAGAATGGTCCTGCTGTGGTCCACTGCAGTGCAGGGATTGGTCGATCTGGGACATTCTCATTGGTTGATACCTGCCTTGTCTTGATGGAAAAGAAGAAGGACCCATCGTCTGTGGATATACAGAAGATACTGTTGGACATGAGGGAGTATCGTATGGGCCTCATTCAAACACCAGACCAGCTTCGCTTCTCGTACATGGCTATAAACGAAGGAGCCAAATTCGTCTTAGGAGACTCCACTCTACAGGAGCAGTGGCAGAAACTGTCTAAAGAGGACAAAGAGCCAGAGGCCTATTTGCAGTCGCCTTCCATGGACAACACAGGGCCTGCAGACAAACTAGATAAAGTCAATGGACAGATGGAAGAGCCAGGAGGAAAAGAAGCTGTGATAGAGCTGCCAAAAGAAGGGCAACAAATAGAGCTAAAAACAGAGAGCCTGCGTAAGAGGCATCGTGAGGAGCGGATAGCCAGCACAGCACAGAAGCTTCAGCAGATGAAGCACAAGCTGAGTGAAtcggagaagaagaaggagaactGGATGTACTGGAGACCCATTCTCTTAAATGTCGGTGCTGGAGCAGCTCTAGCCATGGGACTGTTCATGTGCTGGGCTTTCCTCTCACAATGACACCCCATCAACAGACACTTtccactcatttttttttatttcatagtgGGACCCAGGTCAAAGTACTCTCTAATGATGAgatgcttggatttttgcaagCAATGGATGTTGTTCATCAATTTCTGTCAGTTTTTGTGCTGTTTATGCTGGAAACATTCATCCCAGGACATTCTGCCTGATTTCCTGAatgttatatttacattaattactTTAGTAATTCCATTTCTGTTCAAGCAATCAGCTTCGGGCCTTAACACCTGTAATGTGTTAGGAAACTTGACCCATTAGAACCAATTTAGAATACTTATGCCAGTCAGGTACTGTTTTATAGGAACATTTTTGTTAATCACTCCCTGATctttagataagtgatgtgttTAGGTACTCACCAGGTGCAGATGtcccttttattttgttaaaagaCAGAAATTGTCATTCATGATCTTTATGTTCACATCTCAGGAGTTTTAGTAATGAACTGATGAAAGACTGTCACTGAACATAACAGGTGGGTCATGCTCAATTTTGAAATAATGTATATAGTAAAACACCACAAATGTCTGCTAAACAAAGAAAGTTGTtctttgtctgtttgtctcaATAGTGGAATTTGTTGGTAAGGCTA

Function

NR:

description
PREDICTED: tyrosine-protein phosphatase non-receptor type 2-like isoform X1

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K18026 PTPN2, PTPT; tyrosine-protein phosphatase non-receptor type 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250446.3 True 2103 mRNA 0.44 9 9203427 9211836

Neighbor

gene id symbol gene type direction distance location
LOC111193323 NA coding upstream 32886 9168060 ~ 9170541 (+)
LOC103039510 LOC108428931,LOC108268943 coding upstream 36222 9157067 ~ 9167205 (+)
LOC107197615 NA coding upstream 211204 8954941 ~ 8992223 (+)
LOC103044513 NA coding upstream 275640 8906979 ~ 8927787 (+)
LOC103031605 LOC108430056 coding upstream 520486 8646319 ~ 8682941 (+)
cep76 cep76,LOC107684173 coding downstream 7904 9219740 ~ 9230171 (+)
id4 id4,LOC103041967 coding downstream 138615 9350451 ~ 9354496 (+)
LOC103042493 ncald,ncalda,LOC103042493,LOC108268956,LOC100692199,LOC105901278,LOC106931336 coding downstream 196095 9407931 ~ 9453824 (+)
LOC103043416 LOC108429005 coding downstream 250830 9462666 ~ 9478447 (+)
LOC103043727 LOC108429009 coding downstream 267475 9479311 ~ 9489659 (+)
G89350 LOC103040854 non-coding upstream 3470 9198431 ~ 9199957 (+)
G89343 cep192 non-coding upstream 21633 9179728 ~ 9181794 (+)
G89287 NA non-coding upstream 253167 8949968 ~ 8950260 (+)
G89218 NA non-coding upstream 463700 8737574 ~ 8739727 (+)
G89214 NA non-coding upstream 510550 8686190 ~ 8692877 (+)
G89353 NA non-coding downstream 340 9212176 ~ 9216001 (+)
G89355 NA non-coding downstream 5982 9217818 ~ 9218032 (+)
G89377 NA non-coding downstream 35476 9247312 ~ 9266949 (+)
G89379 NA non-coding downstream 71741 9283577 ~ 9285115 (+)
G89386 NA non-coding downstream 131902 9343738 ~ 9344004 (+)
sumo1 NA other upstream 953993 8242319 ~ 8249434 (+)
LOC111193322 NA other upstream 1123399 8077097 ~ 8080028 (+)
G88849 NA other upstream 1623467 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 1960450 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 3740402 4911656 ~ 5463025 (+)
G89453 NA other downstream 390935 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 763361 9975197 ~ 10000914 (+)
G89805 NA other downstream 1473821 10685657 ~ 10686056 (+)
G89806 NA other downstream 1476430 10688266 ~ 10688820 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other downstream 1568266 10780102 ~ 10791128 (+)

Expression


Co-expression Network