LOC107197615


Basic Information

Item Value
gene id LOC107197615
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8954941 ~ 8992223 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605724.2
ACATGGCAGTGGGCGCGCGCCCTCTCCCCCGCGCTCCCGCGCACTCGGACGGGCTTCGGAGAGCGAGCGCGCTGCACTAAACATCAGCCTGAAGCTCGAGCGCTATTCCTCATCCTGCTCCTCGCGCGCAGCCGCACGCCGCCGACGCGCGCGCTCCCCGCATGAACAGGCATAACAATGCAGTGGACCCCTGAGCAGCCGCAGTGGGCGGAGCAGCACTATGACATCACCTCCACCACACGCTCACCAGCGCACAAGTTTGAAGCTTTCCGGAGTCCGAGACTGACAAGTTCATCTTCCGCCCGGGTGTACCAGCACACCTGGGCCAACGACGACATTTCTGCCCTCACTGCCTCCAACCTGCTGAAAAGGTACGCGGAGCGATACTCCATTTTGGACCTACCCTGTGAGGGTGGACTAATGAGTTACCCAGAACCTCCCCTGTCTGCAGGCGTTAATGGAACCGGTGTCATTAGCGGAGCTCCGCCCCTCCTTAATGGACGAAAACTGGAGGTGGAGCCTTGGCTGGAGGGCGTGTACCCACCACTGGGCTGCATTTCCGAGCTGGTCCCCAAAGCGCCGTTGAGCGTGTCGGACATCTCGGCAAGCGTATGTAGCTCACCTGTGGAGCCCAGCTtctccagcagcagctgcagtagTCAAACCAGCGCCCAGGAGTACAGCAGTGCTCTGTACACCGCCCCCTACCTGCAGTCTGTGGGATCTTACAACGGTCCGCTTCTCCACCCTGTTGCCTCACATCCTAATTTGGTACCAGCCTATAGTGCCAACACTTCGCCCAGCCTGCCTACTTACGGTTACCCGAATGCAGGTTTTCCATCCCAAAGCAGTCTGTCGCAGAGTTACAGCCCACCATCAGCCACACCTTTACCAACGTCCAGCATGAGTGGATACTCTTACCCAACCCCCAGTCTCGCACCAATGGCTCCCAGTGCTTCAGATAACTCCCCCAGTTCCAGCAGCCTCGGCAAAGCTTATTACCAAGTCGGTCAGGGTGATATGCGAGCGTTTGATGAATTTGGCTTCAGTGGTACTGCAGACTCTGACAGCCAGTCCGCAAGCAGTCCCCTGTACAGACCACCAGGGGGCGAAGAAAGGCACAACAGAAATGGGTTCGACCAGTCGTCAACCAGCACTGCACCACTGCCCTTcaaaccagccaatcacagcgacTCGCTCAGAAGTCTCGAGTCTCTCACTGCAACTATGGGCGAGCCCACCAGTGCCGCGCCTGGACCGTGCTTCACCGCCACTTCCTGTTCAGCCGCGTTGTCTAATGCATACTCCCCGGTCTCGTCGCACACACACCTCTGCttggacacacacactccctgctGAGTCTGCACTGCTGTTCGTCCTCTTCTGAGGAGCAGTGGAAAAAGTATGAGCTGTGTGGATGTTTGTGGTCGGTTTTGGCTATGCGGAGGTGCAgtggcgccccctgctgttctgGAGTGTGGTGCTGATGAGCAGAGCAACGGAAAAGAAAAGCGTTCTGGGGTGAAGAAATCTGGACGTGAACCCCGAACTCCCGCCCCTGCAGTGGTCCCTGCGATTAGAACGGGCTGTACAGTGAGACTCAGCTGAGCTCCTGGAGTGGAGTGACAAGACTGAGCATGCTCAGTGCTGAACAAAGATGCCAGTATGTTGCTCCCTCTTCTGGACTTCTACAAAATCCTCTCTGAAGCACAGATATACAAACACATGGTTGCCAGTTTATTAAGTAGACTTACTGTAGCTTGTacttgtactttcactcactgtgcAATCTACAGGTGAAAACTATCATATGGGTTTGTTTAGTAGATGCAGTGCATTTACAGGCGGATTatctgttgttattattaaaaaggctcttaaactgaaaaaaaaaacactccttacatttacattaccttattttacagac
>XM_022673475.1
ACATGGCAGTGGGCGCGCGCCCTCTCCCCCGCGCTCCCGCGCACTCGGACGGGCTTCGGAGAGCGAGCGCGCTGCACTAAACATCAGCCTGAAGCTCGAGCGCTATTCCTCATCCTGCTCCTCGCGCGCAGCCGCACGCCGCCGACGCGCGCGCTCCCCGCATGAACAGCGACATGATGAGCAGCGTATatgGCATAACAATGCAGTGGACCCCTGAGCAGCCGCAGTGGGCGGAGCAGCACTATGACATCACCTCCACCACACGCTCACCAGCGCACAAGTTTGAAGCTTTCCGGAGTCCGAGACTGACAAGTTCATCTTCCGCCCGGGTGTACCAGCACACCTGGGCCAACGACGACATTTCTGCCCTCACTGCCTCCAACCTGCTGAAAAGGTACGCGGAGCGATACTCCATTTTGGACCTACCCTGTGAGGGTGGACTAATGAGTTACCCAGAACCTCCCCTGTCTGCAGGCGTTAATGGAACCGGTGTCATTAGCGGAGCTCCGCCCCTCCTTAATGGACGAAAACTGGAGGTGGAGCCTTGGCTGGAGGGCGTGTACCCACCACTGGGCTGCATTTCCGAGCTGGTCCCCAAAGCGCCGTTGAGCGTGTCGGACATCTCGGCAAGCGTATGTAGCTCACCTGTGGAGCCCAGCTtctccagcagcagctgcagtagTCAAACCAGCGCCCAGGAGTACAGCAGTGCTCTGTACACCGCCCCCTACCTGCAGTCTGTGGGATCTTACAACGGTCCGCTTCTCCACCCTGTTGCCTCACATCCTAATTTGGTACCAGCCTATAGTGCCAACACTTCGCCCAGCCTGCCTACTTACGGTTACCCGAATGCAGGTTTTCCATCCCAAAGCAGTCTGTCGCAGAGTTACAGCCCACCATCAGCCACACCTTTACCAACGTCCAGCATGAGTGGATACTCTTACCCAACCCCCAGTCTCGCACCAATGGCTCCCAGTGCTTCAGATAACTCCCCCAGTTCCAGCAGCCTCGGCAAAGCTTATTACCAAGTCGGTCAGGGTGATATGCGAGCGTTTGATGAATTTGGCTTCAGTGGTACTGCAGACTCTGACAGCCAGTCCGCAAGCAGTCCCCTGTACAGACCACCAGGGGGCGAAGAAAGGCACAACAGAAATGGGTTCGACCAGTCGTCAACCAGCACTGCACCACTGCCCTTcaaaccagccaatcacagcgacTCGCTCAGAAGTCTCGAGTCTCTCACTGCAACTATGGGCGAGCCCACCAGTGCCGCGCCTGGACCGTGCTTCACCGCCACTTCCTGTTCAGCCGCGTTGTCTAATGCATACTCCCCGGTCTCGTCGCACACACACCTCTGCttggacacacacactccctgctGAGTCTGCACTGCTGTTCGTCCTCTTCTGAGGAGCAGTGGAAAAAGTATGAGCTGTGTGGATGTTTGTGGTCGGTTTTGGCTATGCGGAGGTGCAgtggcgccccctgctgttctgGAGTGTGGTGCTGATGAGCAGAGCAACGGAAAAGAAAAGCGTTCTGGGGTGAAGAAATCTGGACGTGAACCCCGAACTCCCGCCCCTGCAGTGGTCCCTGCGATTAGAACGGGCTGTACAGTGAGACTCAGCTGAGCTCCTGGAGTGGAGTGACAAGACTGAGCATGCTCAGTGCTGAACAAAGATGCCAGTATGTTGCTCCCTCTTCTGGACTTCTACAAAATCCTCTCTGAAGCACAGATATACAAACACATGGTTGCCAGTTTATTAAGTAGACTTACTGTAGCTTGTacttgtactttcactcactgtgcAATCTACAGGTGAAAACTATCATATGGGTTTGTTTAGTAGATGCAGTGCATTTACAGGCGGATTatctgttgttattattaaaaaggctcttaaactgaaaaaaaaaacactccttacatttacattaccttattttacagac

Function

GO:

id name namespace
GO:0051962 positive regulation of nervous system development biological_process

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605724.2 False 1930 mRNA 0.55 2 8954941 8992223
XM_022673475.1 True 1953 mRNA 0.55 3 8954941 8992223

Neighbor

gene id symbol gene type direction distance location
LOC103044513 NA coding upstream 27154 8906979 ~ 8927787 (+)
LOC103031605 LOC108430056 coding upstream 272000 8646319 ~ 8682941 (+)
LOC103031921 NA coding upstream 325597 8602147 ~ 8629344 (+)
sucla2 sucla2,LOC107705569,LOC107677548,LOC107706648,LOC107581356 coding upstream 380697 8548143 ~ 8574244 (+)
LOC103021515 abi2,abi2b,LOC107706652,LOC107584785 coding upstream 434967 8491411 ~ 8519974 (+)
LOC103039510 LOC108428931,LOC108268943 coding downstream 164844 9157067 ~ 9167205 (+)
LOC111193323 NA coding downstream 175837 9168060 ~ 9170541 (+)
LOC103041465 LOC108429001,LOC107751897 coding downstream 211204 9203427 ~ 9211836 (+)
cep76 cep76,LOC107684173 coding downstream 227517 9219740 ~ 9230171 (+)
id4 id4,LOC103041967 coding downstream 358228 9350451 ~ 9354496 (+)
G89287 NA non-coding upstream 4681 8949968 ~ 8950260 (+)
G89218 NA non-coding upstream 215214 8737574 ~ 8739727 (+)
G89214 NA non-coding upstream 262064 8686190 ~ 8692877 (+)
G89209 NA non-coding upstream 311808 8642834 ~ 8643133 (+)
G89189 NA non-coding upstream 371430 8583265 ~ 8583511 (+)
G89343 cep192 non-coding downstream 187505 9179728 ~ 9181794 (+)
G89350 LOC103040854 non-coding downstream 206208 9198431 ~ 9199957 (+)
G89353 NA non-coding downstream 219953 9212176 ~ 9216001 (+)
G89355 NA non-coding downstream 225595 9217818 ~ 9218032 (+)
G89377 NA non-coding downstream 255089 9247312 ~ 9266949 (+)
sumo1 NA other upstream 705507 8242319 ~ 8249434 (+)
LOC111193322 NA other upstream 874913 8077097 ~ 8080028 (+)
G88849 NA other upstream 1374981 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 1711964 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 3491916 4911656 ~ 5463025 (+)
G89453 NA other downstream 610548 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 982974 9975197 ~ 10000914 (+)
G89805 NA other downstream 1693434 10685657 ~ 10686056 (+)
G89806 NA other downstream 1696043 10688266 ~ 10688820 (+)
LOC103044517 onecutl,LOC108441924,LOC107732477,LOC108268128,LOC107741751,LOC106580869,LOC107663311,LOC107689849 other downstream 1787879 10780102 ~ 10791128 (+)

Expression


Co-expression Network