LOC111193322


Basic Information

Item Value
gene id LOC111193322
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 8077097 ~ 8080028 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU119678
GGAGGTCAACAGGCAGGCATTTTGGAAGCGCACCTTGAACATCACCACGCGCATGAGCCAGAAGATGCTGCAGATTAACATCTCGCCATCGGTCTTCACCCAGGTCATTTCTGACCTGAAGAACAGGACGGACCATTGAAGGAtcggactaaaaaaaaaactaattctaactttaatatttatattttactatcaAGTCGCTTattagaaaacacattttactattaaataATTTCTGTTACTACTAGGAATAAAGGCAACAAGCGTAACATAGTATTAGGcaagaaaactaaacaaataaaaactcaaataaGAGCAAAACGAGTAGGTTACACcatcaaatacaaacaaaatagtGAGACCaacaaaaaattattataagtagatccaaaataaaacacttttgcATGATGCTTGGACAGAACCGGACTAGACTTGGGAAACTACAAAGAAATGGACAAACTGGACAGATGGCAGGGCAGGAAACGTCCAAACACATTCAGCGGTCCAGTGAAGTGTCCTTATAGGGACAGTTCATAAAGCTGCAGTGTCTGGCTTCACGTGTTTTGGAGGCAGCACATGATAGCCTTCACTGCTCCAGCTTGGGGGCAGCGTATGTGGTGGAAGAGGAACTGCTGATGCAGGAAAGCGGGCTTATGGACTAGGAGAAAGACTGATTGACACAGGGAGGCTCCAAGATCAAAACAGGGACGGTAACATAGATAGAAACATGGACAGTGACGAGATAGACTGGATACTAGAAGTGGACGTCACCTGAGGAcaagacacacagacaggatAAACaatggctatatatatatatatattattttattatatatttagttgTGCTATCCCGTGTCGACCAGAGGAGGACTGGTTccccttttgagtcttggttcctctcgaggtttcttcctcctgATCTGAGGGAGTTTTCCTTGCTACTGTCGCCATTGGCTTGCTCAAAAGGGGCTTGGACACGGAACTAgctatttaggtttatttaaattaaaattaatattagtcCTGATCAGTATGAAAATGTCAGGGACAATAAGAACTTTCAGTAATCAAAAACATTTGCTAGTataattttatgatttatgttaaattttaattttatacttCAATACTGAAGTGCAGAGCACCTTTATGACCAATATGGTTGCCAGTTTTAATTGTCACTTTAATGAACTCTAATAAATAATcctaaataatattatttagttttatttagttgaacaaatgtttatgaatatttatataaattaataataattgttatattaaaataacattttcattaaatactcaatattaaacaatattacattttaaaaagtctagGCAAA
>XM_022673455.1
tacaccacacactttctacaccacacactttctacaccacacactccatTCACATTCACTTTTACCACTTTCATCATCAACATGGCCAGCTCATCGGTTCAGCATCTCATCCAtggagaagaggagaagaagacCCAGGGAAGGAAGAGGCCCAGGTCTCAGCAGACACATGTTCCTGCATCTCCTGAAGAACCGGCAGCGAAGAGGAGGAAGATTTTCACTGTTGCTCTTACGCACAGGATGTCCATCAGGAATGTCTTTTGTCCCAGGCTGCTGTGTTTGGTGGGAGAGTTTTTGTGTCGCCGCTGTCGACTCATCAAGGGTCTTTCTCCAAATGTTCCACCGCTCTGGGTACACAAAGTGGACATGGCGCTGACCGTGGCCAGGGCTCAGCAGGAGTCCTTCATCTGCTCAGGCGCCGTGGTCTTTCTGTACATGTTGTGCCGCGACACTGTCTCAGCGGAGGTGGCCAGCGTTGAGGAACTGCGTGCGGTTTTGCTCACCTGCCTGTATGTATCATGTTCATACATTGGCCCTGAGGTAGGCTACCCAGCAAGGCATTTCATCAGGGAGGTCAACAGGCAGGCATTTTGGAAGCGCACCTTGAACATCACCACGCGCATGAGCCAGAAGATGCTGCAGATTAACATCTCGCCATCGGTCTTCACCCAGGTCATTTCTGACCTGAAGAACAGGACGGACCATTGAAGGAtcggactaaaaaaaaaactaattctaactttaatatttatattttactatcaAGTCGCTTattagaaaacacattttactattaaataATTTCTGTTACTACTAGGAATAAAGGCAACAAGCGTAACATAGTATTAGGcaagaaaactaaacaaataaaaactcaaataaGAGCAAAACGAGTAGGTTACACcatcaaatacaaacaaaatagtGAGACCaacaaaaaattattataagtagatccaaaataaaacacttttgcATGATGCTTGGACAGAACCGGACTAGACTTGGGAAACTACAAAGAAATGGACAAACTGGACAGATGGCAGGGCAGGAAACGTCCAAACACATTCAGCGGTCCAGTGAAGTGTCCTTATAGGGACAGTTCATAAAGCTGCAGTGTCTGGCTTCACGTGTTTTGGAGGCAGCACATGATAGCCTTCACTGCTCCAGCTTGGGGGCAGCGTATGTGGTGGAAGAGGAACTGCTGATGCAGGAAAGCGGGCTTATGGACTAGGAGAAAGACTGATTGACACAGGGAGGCTCCAAGATCAAAACAGGGACGGTAACATAGATAGAAACATGGACAGTGACGAGATAGACTGGATACTAGAAGTGGACGTCACCTGAGGAcaagacacacagacaggatAAACaatggctatatatatatatatatatatatatatatatatatatatatatatatatatatattattttattatatatttagttgTGCTATCCCGTGTCGACCAGAGGAGGACTGGTTccccttttgagtcttggttcctctcgaggtttcttcctcctgATCTGAGGGAGTTTTCCTTGCTACTGTCGCCATTGGCTTGCTCAAAAGGGGCTTGGACACGGAACTAgctatttaggtttatttaaattaaaattaatattagtcCTGATCAGTATGAAAATGTCAGGGACAATAAGAACTTTCAGTAATCAAAAACATTTGCTAGTataattttatgatttatgttaaattttaattttatacttCAATACTGAAGTGCAGAGCACCTTTATGACCAATATGGTTGCCAGTTTTAATTGTCACTTTAATGAACTCTAATAAATAATcctaaataatattatttagttttatttagttgaacaaatgtttatgaatatttatataaattaataataattgttatattaaaataacattttcattaaatactcaatattaaacaatattacattttaaaaagtctagGCAAAAAAACTAAGCTTAAAAGTAACTTATTTTCTTATAACTAattaaaaagcactatatattTACTTAGTATATAATTAATGAACTGAAAGATTGCTAAAAGCAAAGATTATCAAATACAAACATCTGTAAAATAGATGTAGATATGTGCTTATTGTACAATACAGAACTAGTTCTGTATTGtacaatacagtaaatacaatacagtaaatacaagtAAATTTATTAGGTTTATTAGAGCACAGGTTAAACACAGGTTAATGCagagaaaggggaggagccTGAACAGGTAAATCTCACCACCCTTCTTCTTCATGAGATACTGAGGGTCACAGCTGTCTTAGAGTTTGATCTATCATCATCAGATCCACAGTTCAGAAACAGCAATACTACAGTCACCCACACCCAGAAGAAGTGCAGCAGAGTTCTTCTCATGGCAGCTGAAGTGAAGAGCTGTATCTCCTAAACCTTCCTGTTTTATAGAGTAACATTTATCTATCAAATGTTTGACCTCTGtcaaaaaaacttaataaattTTAACATCAGTTAAACCTAAAACTGCTTTGTGTGgcctctgtttatttattatataactaCATTCACTAATGCTGTTAACAGTGGAATTGTCTGTAGTGATCAAATAGTTAacaatttatatatgtttattaccGTATATTACTCTAATATGTTTTGATTTGGTCTGTAATTTGTAATGAAGTGTAACTGTtgtatttctaaaattaaactgGTGATCTGAAAATTTGATTTCCTATAAAGTAGATAACCAGTTTAATTTTAGACATTTAGACAGTTATTGTTAaaacatcatatcatatcatattttttgaAGAGTATAATGgtattaaataacatttaaatctgCATTAATACAGCATTAATTAGTTTAGAATAATTTGTTCAACATACTAAAATGATCTCAAGaggaatgttaaaatattagaagaatgtttaaaa

Function

GO:

id name namespace
GO:0043085 positive regulation of catalytic activity biological_process
GO:0045859 regulation of protein kinase activity biological_process
GO:0042327 positive regulation of phosphorylation biological_process
GO:0010842 retina layer formation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119678 False 1355 lncRNA 0.36 2 8077666 8079058
XM_022673455.1 True 2932 mRNA 0.37 1 8077097 8080028

Neighbor

gene id symbol gene type direction distance location
LOC103032863 kalrn,kalrnb,LOC107706669,LOC107581345,LOC107705539,LOC108272447,LOC107677582,LOC107659990 coding upstream 7982 7896290 ~ 8069115 (+)
LOC103033509 tbx19,LOC108430034,LOC108272403,LOC107677559,LOC107660020,LOC107581437 coding upstream 224103 7832372 ~ 7852994 (+)
LOC103042672 zgc:112392,LOC108430045,LOC108272735,LOC107705522,LOC107584803,LOC107581439,LOC106575771,LOC106574874 coding upstream 248364 7819031 ~ 7828733 (+)
LOC111193321 LOC107584855 coding upstream 259528 7809016 ~ 7817569 (+)
LOC103027817 NA coding upstream 273282 7797333 ~ 7803815 (+)
LOC103024957 LOC108429998 coding downstream 138093 8218121 ~ 8222533 (+)
als2 als2 coding downstream 277714 8357742 ~ 8413424 (+)
mpp4 mpp4 coding downstream 339632 8419660 ~ 8441137 (+)
LOC103023480 tmem237 coding downstream 362094 8442122 ~ 8459166 (+)
LOC103022662 cyp20a1,LOC103022662,LOC108430007,LOC108272693,LOC107660127,LOC107677549,LOC107706624 coding downstream 399761 8479789 ~ 8489276 (+)
G88976 NA non-coding upstream 1403 8075481 ~ 8075694 (+)
G88919 NA non-coding upstream 203666 7873077 ~ 7873431 (+)
G88917 NA non-coding upstream 206077 7869776 ~ 7871020 (+)
G88908 NA non-coding upstream 219476 7857381 ~ 7857621 (+)
G88906 NA non-coding upstream 221947 7854869 ~ 7855150 (+)
G88977 NA non-coding downstream 2033 8082061 ~ 8085861 (+)
G88981 NA non-coding downstream 21867 8101895 ~ 8102803 (+)
G88990 NA non-coding downstream 36332 8116360 ~ 8168430 (+)
G88991 NA non-coding downstream 37847 8117875 ~ 8120432 (+)
G88998 LOC107584837 non-coding downstream 75674 8155702 ~ 8158423 (+)
G88849 NA other upstream 497137 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 834120 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 2614072 4911656 ~ 5463025 (+)
G88486 NA other upstream 3270424 4796822 ~ 4806673 (+)
G88473 NA other upstream 3396260 4680113 ~ 4680837 (+)
sumo1 NA other downstream 162291 8242319 ~ 8249434 (+)
G89453 NA other downstream 1522743 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 1895169 9975197 ~ 10000914 (+)
G89805 NA other downstream 2605629 10685657 ~ 10686056 (+)
G89806 NA other downstream 2608238 10688266 ~ 10688820 (+)

Expression


Co-expression Network