LOC103032863 (kalrn,kalrnb,LOC107706669,LOC107581345,LOC107705539,LOC108272447,LOC107677582,LOC107659990)


Basic Information

Item Value
gene id LOC103032863
gene name kalrn,kalrnb,LOC107706669,LOC107581345,LOC107705539,LOC108272447,LOC107677582,LOC107659990
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7896290 ~ 8069115 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022673454.1
atGAATTCTGCCGAGGCGGCGGAGGAAGGACCGACCGACCCGGACACGGAGCCGTTCTTCAGGACAGTGCCCTCCCTCTCGTCGGGGTCTCTGAGGAATGATGGGATAAAGGCGGCCGATGTTCTAACAGTTCTGAGGGAAAAGGTCGCTTTCGTCTCAGgAGGGAGAGACAAGAGAGGCGGTCCCATCCTCACCTTCCCGGCCCGCAGCAACCACGACCGAATAAAGCAAGAGGACCTGCGCAGACTGGTCACCTACCTCTCCACCGTGCCCAGtgagGATGTCAGTAAACGTGGCTTCACCGTCATCATTGATATGCGAGGCTCTAAGTGGGACCTGATCAAGCCGCTGCTGAAGACCCTGCAAGAGGCGTTCCCCGCTGAGATCTGCGTGGCCCTGATCATCAAACCAGACAACTTCTGGCAGAAGCAGAAGACCAACTTTGGCAGTGCCAAATTCACGTTTGAGACCAGTATGGTTTCAGTGGAGGGCCTAACCAAGCTGGTGGATCCGTCCCAGCTGACGGCCGACTTGGAAGGTACTCTGGAGTACGACCACGTGGAGTGGACGGAGCTGCGGGTTTCCCTGGAGGAGTTTACTGGCGGCGCGCTGCACCTCCTGTCCCGCCTGGAGGAACTGCAGGAGACACTGTCCCGTCAGGAGATGGCCATCGACTCTGAGGAGGCCCGCAGGCTGCTGGAGGAGCACGCCCGGCTCAGAAAGACCATCACCAAGGCCCCGGTGGACGAGCTGGACCACGAGGGCCAGAGGTTGCTACAGAAGATCAGAGACGGGGGTGACGGGAGACTGTCTGGGGGGCCGGACTTCCAGAGCTTGGTACCCAGAGTTGCCGCCTTGCTGGACAAGCTGCAGGCTACCCGACAGCACCTGCTGCAAGCCTGGCACAACCGAAAGCAGCAGCTGGACCAGTGCTTTCAGCTACGCCTCTACGAACAAGATGCAGAGAAGatgtTTGAGTGGATAGGGCACAATAAAGAACTGTTCCTGCAGACTCACACAGAGATCGGAGTGAGCTACCAACACGCCACTGACCTGCAGACGCAGCATGACCACTTCGCCATGAACTCCATGAACGCTTATGTAAACATCACACGGATCGTGTCAGTGGCGACTCGGCTGTGTGAGGCGGGACACTACGCGgcggatcagatacagcaggtCTCGGCACAGCTGGATCAGGACTGGAAAAGCTTCGCCTCGGctctggaggagcgcagcgctATTCTAGCCATGTCTTCAGTCTTTCACCAGAAAGCTGAGCAGTTCCTGTCAGGAGTGGAGGGCTGGACGAAGTCCTGCAGTGAGGGTGGGCTGCCCACGGCCATGCAGGAGCTGGAGCTAGCCATCCACAGCCACCAGAATCTCTATGAGCAGGTGACCACAGCTTACACTGAGGTCAGTCAGAAGGGGAAGACACTGCTGGACGTTCTTCAGAGGCCGCAGCCGACAGACTCTGGGTCAGTGACAGCGGGTGCCGACTACAGCCAGGCAGTGCGCGGGGTGCTGGACGTGGTACACGAGGTGGTGCATCAGTACCGCAGACTGGAGGGCCTTCTGCAGCACCGCAAGCTCCGCCTCCACCAGAgactgcagctgtgtgtgttccAACAAGATGTGCAGCAGgtgctGGACTGGATCCAGAACCATGGAGAGGCTTTTCTCAGTAAACACACTGGGGTGGGCAAGTCTGTACATCGAGCACGAGCGCTACAGAAACGCCACGATGACTTCCAGGAAGTGGCACAGAACACATACACTAACGCTGATAAGCTGCTGGAGGCGGCGGAGCAGTTAGCTCAGACCGGAGAGTGTGACCCTGAGGAGATCTACGCTGCTGCTCATCATCTGGAGGTCAGAGTTCAGGAGTTTGTTCGCCGAGTGGAGCAGAGAAAACTGCTGCTGGATCTCTCCGTctccttccacacacacaccaaagagCTGTGGTCATGGATGGAGGAGCTACAGAAGGGTTTGGTGGAGCCCGTATGTTCTGAGACGGTGGACTCGGTGCAGGAGCTGATCCGGCagttccagcagcagcagagcagcacacTGGATGCCACTCTTAATGTTATTAAAGAAGGAGAGGAGCTCATCCAGCACTTACGGGACTCAGCGTTGGCGAGTAACAGGCTGCCCCATGCCAGCTCAGTAGCTCATATAGAGAGTGTGTTGCAGCAGCTGGACGAGGCGCAGGCGCATATGGAGGAACTGTTCCACGAGCGACGGATCAAGCTGGACATCTTCCTCCAACTGCGCATCTTCGAGCAGTATGCcctggagGTAACAGGTGAGCTGGACGCGTGGAAGCAGGACTTGCTGAGGCAGGCGTCCGACTACAACACTGAGGATCTCTCGCTGGCCGAGCAGAGGCTGCACCGCCACACCGAGCGCAAGCTGGCCATGAATAACATGACCTACGAGGTCATCCAGCAGGGTCAGGACCTGCACCAGTACATCATGGAGGTTCAGGCTTCAGgtaTGGACCTGAGTGGGGAGAAGGACGTGGACCTGGCTGCTCAGGTTCAGGAGCTGCTGGAGTTTCTGCACGAGAAGCAGCACGAGCTGGAGATGAGtgccgaacacacacacaagcgccTCGAGCAATGTTTACAGCTGCGCCACCTACAGGCCGAGGTCAAACAGGTGCTAGGCTGGATCCGTAATGGTGAGTCTATGCTGACGGCCAATACGGTGAACGCTGGATCTCTGTCTGAAGCGGAGCAGCTGCAGAGAGAGCACGAGCAGTTTCAGCTCGCCATTGAGTCTCTGCTCCACGCCGACTCTCTGCAGCGGACCCATCAGAGCGCGCTGCAGCTCCAGCAGAGGGCAGAGATGTTGCTGCAGGCTGGACACTACGACCCGGACGCGGTGCGGGCCTGCGCCGAGACGGTGGCCCTCCACTGGCAGACCCTCATGCTGAAGATGGAGGACAGGCTTAAGCTAGTCAATGCCTCAGTGGCCTTTTATAAAACCTCGGAACAGgtgtgtaatGTGCTGGAGAGTCTAGAGCAGGAGTACAGGAGGGAGGAGGACTGGTGTGGAGCTCACGACAAGCTGGGCTCAGCGGCCGAAACGGACCACGTGGCTCCCTTAATCAACAAACACCTGGAGCAGAAAGAGGCCTTCCTCAagGCTTGCACTCTTGCCAGACGGAACGCTGAGGTCTTTTTAAAGTACATCCACCGCAATAACGTCAGCATGCCGGGTGTCACCACTCACAACCGCGCTCCTGAAACGCAGGTCAAAGCCATCCTGAGCGAGCTACTCCAGAGAGAGAATCGTGTCCTGCATTTTTGGACCATGAAGAAAAGGCGCTTGGACCAGTGCCAGCAGTACGTGCTGTTTGAACGGCATGCCAAGCAGGCCTTGGACTGGTTGCAGGATACGGGTGAGCAGTATTTGTCCACACACACGTCTCCAGGTGAAACCACAGAAAAAACTCAGGAACTGCTCAAAAACTACGAGGAATTCCGCGTCTCTGCAAAGCAAACCCAGGAGAAGGTGAAGCTGCTGATTCAGCTTGCTGGCAGTCTGGTGGAGAAGGGTCATGTTCATGTGACAGAGCTGAAGAAGTGGGTGTCCACAGTGGACCGGCGCTACCGGGACTTCTCCCTGCGCATGAGCCAGTACCGGTCCAGTCTGGACCGAGCACTGGGGCTGTGTTCTGAGgacaataaAGATTTGGAGTTGGACATCATCCCTGCCAGCCTCACCCACACTGACCCAGAGGTCAACCTCAACGACCCCGACCACGAGGTCAACGAGGAGAAGAAGAAATCAGCCAGGAAGAAAGAgTACATCATGGCCGAGCTGCTGCAGACTGAGAGGGCATACGTGAGGGACCTGCAGGAGTGTTTAGagACGTTCCTCTGGGAGATGACAAGCGGGATGGATGAGATTCCACAGGGAATCGCCAACAAGGAGCATGTCATCTTCGGGAATATTCAGGAGATATATGATTTCCATAACAAtatttttctaaaagagcTGGAGAACTACGAGCAGCTGCCCGAGGACGTGGGCCACTGTTTTGTCACATGGGCTGATAAATTCCACATGTACGTTACCTACTGCAAAAACAAGCCGGACTCCAGCCAGCTCATCCAGGGCCAGGCTGGACGCTTCTTTGATgaGATCCAGAGAAGACACGGGCTGGCCAACTCCATCTCCTCCTACCTCATCAAACCGGTACAGAGGATCACCAAGTACCAACTGCTGCTAAAGgagTTACTGACGTGTTGTGAGGAGGGGAAAGGGGAGATAAAGGAGGGTCTGGAGGTGATGTTGAGTGTGCCTAAGCGAGCCAACGATGCCATGCATGTGAGCATGCTGGAAGGTTTTGATGAGAACCTGGCTGTTCAGGGGGAGCTGATCCTACAGGACACGTTCCAGGTGTGGGACCCCAAGTCCCTGATCCGGAAAGGCCGAGACCGCCACCTCTTCCTTTTTGAGATTTCCCTCGTCTTCAGCAAAGAGATGAAGGACTCGTCTGGACGCACAAAATATGTCTATAAGAGCAGACTGCTGACTTCAGAGCTGGGTGTGACAGAACACATCGAGGGGGACCCCTGCAAATTTGCCCTGTGGGCGGGACGCACTCCGACCTCAGACAGCAAAACCATCCTTAAAGCATCCAGTATGGAGGTAAAGCAAGAGTGGATCCGGAACATCCGGGAGGTGATCCAGGAGAGGACAGTGCACTTAAAGGGGGCATTAAAGGAGCCCATCCACCTGCCCAAAACCCCAGCCAGGCAGcgcagcatcagcaagagGGAAACCACTGAGGATGCAGACAGTCAGGGAGATGCCAGCAGCCAACCGGACACCATCTCCATCGCATCACGAACATCTCAAAACACGGTGGACAGCGACAAGTTGTCTGGAGGCTGTGAGCACACGCTGGTCCTGCAGGACTTTGCGGCCGGTTGTGCGGCTGAGCTGAGTGTACAGTCAGGTCAGACGGTGGAGGTGCTGGAGCGTTCTGGTGAGCGGCCTGGCTGGTGTCTGGTGCGGACCACCGAGCGTTCCCCACCACAGGAGGGTCTGGTTCCCTGCAGCACCCTGTCCGTCTCCCACTCCCGCAGCAGCGTCGACATGGACTGCTTCTACCCCACCGGCAAAGAGAACTATCCAGTGGGCAGCTCAGAAGTGAAGTCGGAGTCAGTGGCGTCGCTGCAGCCTCAGACGTCCGTGAGCTCTCTGCCCACCAGCTCTCCTGGACCCAAACGCTCGGGAACCACCGGGAACACGCTAAAGAAGTGGCTGACAAGCCCTGTCCGGCGCCTGAGCCACGGCAAAGGAGACAACGCCAACGCCAAGAAACCCAACAACAAGCAGCGCAAACGGGACGGCCGCAAGAGCGTGGACCTGGGTCCTCAGCACGAGGACAGCACTGAGGAGAGAGGACGAAGAGGAACAAAcagtggaggagaagaagaggcAGAAGACGAGCCGCACACACCTCTACCACCTCCAATGGAGATCATTAAAGATCCCTCGGCTCAGGAGGAGAAGACCCCTGAGCCTGGCTCATTCCCAGCGTTCGGCAGTGTGACAGCGTCTGATCAAACACCCCGAGACCCAGAAACAGAGAAGAAGAACAAAGCCCTGAGAGGCCGAATgtttgtGCTGAATGAGATGGTGCAGACAGAGAAGGACTATGTGAAAGATCTGGGTATAGTAGTGGAGggtTTTAAGAGGAGAGTTGTGGAGAAGGGTGTTCCAGAGGACATGACGGGGAAGGATAAGATTGTTTTTGGCAACATTCATCAGATCTACGATTGGCACAAAGATTTCTTCATGGGTGAACTGGAGAAATGCTTGCAGGACCATGACAAACTGGCCGAGCTGTTCATCAAACACGAGAGGCGGCTGCACATGTACGTGATCTACTGTCAGAATAAACCTCACTCAGAGTTTATTGTGGCGGAATATGAGGCGTTCTTTGAGGAAATAAAGCAGGAGGTCAACTCCAGGATGTCCATCAGTGATTACTTAATCAAACCCATTCAACGCATCACCAAATATCAACTGCTACTTAAGGACTTTTTGAAATACAGTTCGAAGGCAGGCTTGGACTGTCAGGAGATAGAGAAAGCTGTAGATCTGATGTTCCTGGTGCCCAAACGCTGCAATGATATGATGAACCTGGGCAGACTGCAGGGGTATGAGggtaaACTTACGGCTCAAGGGAAGTTGCTTCAGCAAGACACGTTCTTCGTGACGGAGCAGGATTCAGGTGTTCTCTCCCGCAGTAAAGAGCGCCGGGTTTTCCTCTTCGAGCAGATTGTCATCTTCAGTGAACTTCTTCGCAAAGGATCCTCAACACCTGGATACCAGTTCAAAAAGAGCATCAAGGTGAGCTATCTGAGCATGGAGGAGCATGTGGAGAGTGACCCATGTAAATTTGTGCTGGCGTGCCGCGGCTCATCTGAGAGGCTAACGCTACAGGCTGCTAACATAGACATTAAGATGGAGTGGGTCCGCAGCATCCGGGAGCTCCTGGACCTGCAGAGTAATTTCCTCACAGCTCTGCAGAACCCGCAGGAGtatcaaaagaaagaaactgGAAGCTCTCACTCTCTGAGCCGCCAGGCGTCCAGCAGCAGCCGCTCTTCATCCTCACACCCATCCACACCACTAAAACCTGCCTCTGCCTCCAACGGAAGCCCCGCCCACAAACCCAGCAAGCAACAGGAGGAGGAGCTGGATGAGGCGGAGTGTAATGGTTTGTCCTCGGTGCTGGTGACGCAGGACTACAACGCAGTGAAGGAGGATGAGATATGCGTGGTGGTGGGCGAGAAGGTGCAGATCCTTGCGTCCAATCAGCAGAACATGTGCCTGGTGTACCGGCCCGCCAACAGCCAATCGCCTGCCGCCGAGGGCTGGGTGCCGGGACACGTGCTGTCCTCGACCCGGTAAAGCCACGCCCCcattctcctcttcctctgtctcCACCTCCGTCTCCGCCTCGGGAATAAAAGCCTCCAGTGACTTAACCAATCAGCATTCACCTTTCAGTTTCACCACAGTGGACTCGATACCAAGAAGGCGTTCAGGACATGCCAGGCCTCACCCTCCTCTTGAGTTCTCATTGGCTGATCAAACATCAACGGACATCTGCCAGAACCCGCCTCCCCTCGCAGTACAGCAGTGAACTGGAGATACGTGCCAAGTTAGACTTGGCCGAGTCGTGACGTCAAAAAAATCTGCTGTGGAAATGGGAGAAAATAAAACACGACAAAAGGAAATaattgaaatatattaataataatgatattaatgataataagaataataataataaagattgtGTTGTATAGAGAGGAACTCAAGGTGAAATTGTTAGTGCATTAAGTGTGAATGCTTTTGAATGTTAGTGTTCTACTGTTTTTCATCGCCATCCTCCATCTGGAATGGACGTTTCTCTCCCGAGagaactctctctctccggcTCTCCCGCGCGCTCTATTTCTCAACCGTCTATGCCAAGCCATTTGCACACTATGTACTATATTTTCTTGTGTTcagattaattattttttgaaagtttttttattgtcttctcGTTTGATTTACAGAaagcatttctttgtttttttcattgacCAAATTCTCAAAAGTCtcttgtagaaaagaaaaaaatgttctgcacttTCCAGAAACCAATGTATCGCAAAGACGCCAAGTTGTGCAATATCACAATAGTCACAATGCTCATCGTTGTACCTTTAATGTAACTaagaattttaaatgtattattctgtatcattttaaaatttgtaCATAATATTTTTGACATTGCCATGATAGAAACATACCAGAGGTAAAATCTTAGCTGTTGACCCTAAAGGATCAGAGAAACGATGGTAGTCCACGCTGCCTCCTCAAACCGGCAGTTACTGTTCTTTTCTACATTCGACATCCTCAGATTTAGTAACAGATTTAGTTGAGAGTCATCCAGATCATATCAGGCCAAACTGTTTACTGAGATTAGTTAATTCCAGTCGGTGTTGTCAATGGAAGATCTTTATAATTGTCAGTAACTCTGCTCTAGCAGTTTCAGGTGGACTCATGGTTGCAGCATCCTCCTGCAGAACTATAtgtgtacataaaaaaagaaaagaaaaagaaaatccagcaggTATTTCACTTGTTAATCTCTGGAATGTGGTTCATAATAAAGCTGGCAATTTTTCATCTTG

Function

symbol description
kalrnb Predicted to enable guanyl-nucleotide exchange factor activity and nucleotide binding activity. Acts upstream of or within hemopoiesis. Predicted to be located in cytoplasm. Is expressed in EVL. Orthologous to human KALRN (kalirin RhoGEF kinase).
kalrn Enables guanyl-nucleotide exchange factor activity. Predicted to be involved in several processes, including NMDA selective glutamate receptor signaling pathway; modification of postsynaptic actin cytoskeleton; and neurotransmitter receptor localization to postsynaptic specialization membrane. Predicted to act upstream of or within several processes, including behavioral fear response; learning or memory; and modulation of chemical synaptic transmission. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: kalirin isoform X1

GO: NA

KEGG:

id description
K08810 TRIO; triple functional domain protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022673454.1 True 8228 mRNA 0.53 49 7896290 8069115

Neighbor

gene id symbol gene type direction distance location
LOC103033509 tbx19,LOC108430034,LOC108272403,LOC107677559,LOC107660020,LOC107581437 coding upstream 43296 7832372 ~ 7852994 (+)
LOC103042672 zgc:112392,LOC108430045,LOC108272735,LOC107705522,LOC107584803,LOC107581439,LOC106575771,LOC106574874 coding upstream 67557 7819031 ~ 7828733 (+)
LOC111193321 LOC107584855 coding upstream 78721 7809016 ~ 7817569 (+)
LOC103027817 NA coding upstream 92475 7797333 ~ 7803815 (+)
rgn rgn,LOC108430038 coding upstream 99808 7786322 ~ 7796482 (+)
LOC103024957 LOC108429998 coding downstream 149006 8218121 ~ 8222533 (+)
als2 als2 coding downstream 288627 8357742 ~ 8413424 (+)
mpp4 mpp4 coding downstream 350545 8419660 ~ 8441137 (+)
LOC103023480 tmem237 coding downstream 373007 8442122 ~ 8459166 (+)
LOC103022662 cyp20a1,LOC103022662,LOC108430007,LOC108272693,LOC107660127,LOC107677549,LOC107706624 coding downstream 410674 8479789 ~ 8489276 (+)
G88919 NA non-coding upstream 22859 7873077 ~ 7873431 (+)
G88917 NA non-coding upstream 25270 7869776 ~ 7871020 (+)
G88908 NA non-coding upstream 38669 7857381 ~ 7857621 (+)
G88906 NA non-coding upstream 41140 7854869 ~ 7855150 (+)
G88886 NA non-coding upstream 155356 7739421 ~ 7740934 (+)
G88976 NA non-coding downstream 6366 8075481 ~ 8075694 (+)
G88977 NA non-coding downstream 12946 8082061 ~ 8085861 (+)
G88981 NA non-coding downstream 32780 8101895 ~ 8102803 (+)
G88990 NA non-coding downstream 47245 8116360 ~ 8168430 (+)
G88991 NA non-coding downstream 48760 8117875 ~ 8120432 (+)
G88849 NA other upstream 316330 7578610 ~ 7579960 (+)
trnap-agg_3 NA other upstream 653313 7242906 ~ 7242977 (+)
pard3 LOC108431315 other upstream 2433265 4911656 ~ 5463025 (+)
G88486 NA other upstream 3089617 4796822 ~ 4806673 (+)
G88473 NA other upstream 3215453 4680113 ~ 4680837 (+)
LOC111193322 NA other downstream 7982 8077097 ~ 8080028 (+)
sumo1 NA other downstream 173204 8242319 ~ 8249434 (+)
G89453 NA other downstream 1533656 9602771 ~ 9610254 (+)
iffo1 iffo1 other downstream 1906082 9975197 ~ 10000914 (+)
G89805 NA other downstream 2616542 10685657 ~ 10686056 (+)

Expression


Co-expression Network