G88761


Basic Information

Item Value
gene id G88761
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7114543 ~ 7118627 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU119406
tgtcacagtttagcccatgtctgtctccctcatttggtctcttgtgctcctgcccctctgtttacctgtcatgtgttccctgccatgtgcttgtgttgtgtttttgtacctgtttccgccctagccccgccctagtccCGCCCTaactattagtgttctcacctgtgtcttgtttgtaaccctgccccctcgttatccaagcccaggtgttcctcactctcctcatgtatttaagcccctctgtttgagcgttcagtgttgagtcttttgtatccttgtccTCTGTATGTAAGTGTTCCAAGTTTGTTCAGGTTGTAATCTTTGTGTTCTcaggttattttatgtttagagttatatttagagtttcaTGTTTCCTCAGTTTTTCTAGTCTTTGTCTTAGTTAGATTTATATCCttatcttgtcttttttttgagttattgcgttacccgtgttttgttttctgtttt
>TU119407
tgtcacagtttagcccatgtctgtctccctcatttggtctcttgtgctcctgcccctctgtttacctgtcatgtgttccctgccatgtgcttgtgttgtgtttttgtacctgtttccgccctagccccgccctagtccCGCCCTaactattagtgttctcacctgtgtcttgtttgtaaccctgccccctcgttatccaagcccaggtgttcctcactctcctcatgtatttaagcccctctgtttgagcgttcagtgttgagtcttttgtatccttgtccTCTGTATGTAAGTGTTCCAAGTTTGTTCAGGTTGTAATCTTTGTGTTCTcaggttattttatgtttagagttatatttagagtttcaTGTTTCCTCAGTTTTTCTAGTCTTTGTCTTAGTTAGATTTATATCCttatcttgtcttttttttgagttattgcgttacccgtgttttgttttctgtttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU119406 True 468 lncRNA 0.42 2 7114543 7118627
TU119407 False 468 lncRNA 0.42 2 7114543 7118627

Neighbor

gene id symbol gene type direction distance location
LOC103044377 napg,LOC108271818,LOC108431250,LOC105890170,LOC107734322,LOC106590336 coding upstream 1113395 5992126 ~ 6001148 (+)
LOC103043891 LOC103043891,LOC108431261,LOC107655697,LOC107653805,LOC107566917,LOC107714010,LOC108271824 coding upstream 1126045 5929824 ~ 5988498 (+)
LOC103042448 NA coding upstream 1188088 5875704 ~ 5926455 (+)
itgb1 itgb1,itgb1a,LOC107566918,LOC107565694,LOC107653806 coding upstream 1239819 5831833 ~ 5874724 (+)
nrp1 nrp1,LOC107565689,LOC106578544 coding upstream 1292669 5728518 ~ 5821874 (+)
vopp1 vopp1,LOC107728740,LOC107757191 coding downstream 150102 7268729 ~ 7326748 (+)
LOC111193320 NA coding downstream 609912 7728539 ~ 7735786 (+)
vps16 vps16,LOC107705536,LOC106592068,LOC107706675 coding downstream 645250 7763877 ~ 7785181 (+)
rgn rgn,LOC108430038 coding downstream 667695 7786322 ~ 7796482 (+)
LOC103027817 NA coding downstream 678706 7797333 ~ 7803815 (+)
G88752 NA non-coding upstream 70679 7043453 ~ 7043864 (+)
G88750 NA non-coding upstream 73031 7041094 ~ 7041512 (+)
G88748 NA non-coding upstream 73921 7040366 ~ 7040622 (+)
G88721 NA non-coding upstream 241677 6865261 ~ 6872866 (+)
LOC111193292 NA non-coding upstream 587324 6518455 ~ 6527219 (+)
G88768 NA non-coding downstream 52556 7171183 ~ 7171412 (+)
G88798 NA non-coding downstream 164562 7283189 ~ 7337692 (+)
G88799 lancl2 non-coding downstream 233826 7352453 ~ 7395810 (+)
G88801 NA non-coding downstream 307396 7426023 ~ 7477250 (+)
G88867 NA non-coding downstream 550628 7669255 ~ 7714191 (+)
pard3 LOC108431315 other upstream 1651518 4911656 ~ 5463025 (+)
G88486 NA other upstream 2307870 4796822 ~ 4806673 (+)
G88473 NA other upstream 2433706 4680113 ~ 4680837 (+)
trnap-agg_3 NA other downstream 124279 7242906 ~ 7242977 (+)
G88849 NA other downstream 459983 7578610 ~ 7579960 (+)
LOC111193322 NA other downstream 958470 8077097 ~ 8080028 (+)
sumo1 NA other downstream 1123692 8242319 ~ 8249434 (+)
G89453 NA other downstream 2484144 9602771 ~ 9610254 (+)

Expression


Co-expression Network