RNA id: TU119464


Basic Information

Item Value
RNA id TU119464
length 1528
lncRNA type inter_gene
GC content 0.52
exon number 7
gene id G88799
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7352453 ~ 7395810 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTATCTGCAACCAGATCTGATTTTGTAAAGTATATTTATCTTTTCTCTCAAGACACAATACATTTGAACAGAAGTGTagatttaccttttaaaactgtaaatgaaatgtaattaacCATGAATTGAGCATAGACCAACATTATGCAACACATGCATTATGTTTAAAAGCACAACAGACCCAAAGAAtgaacacacatgtacacacactcagatgcatcataatgtgtgtgtgctgcttcAGCTGCATACCTTGCAGGCTCGGTACAGGTATTTGGGATCCTGTGTGAGTTTGTAGAGGGACAGGAAGGCGTATCCATTACCGGCCGTGCCGTGACAGATTCCGTATCCTTTCCTCAGTAATCCTCTCTGCCAAATTACCTCCCCACAGTCCACCGCATCCTTCACGTACTTCTCATCCTTAAACACCTATTGGCCATTATTAGCATGTGCACCACGCCTGGCGCTCCGTGACACCAGTGCACCAGCCTGTCTGTCTCgttgctgagggatgatgggtAATTGCCTGAGCGGAACTTTTTGTGCCGTACGTAATCTACACTGGGCCGAACCAATTCAGACAGCATCTCAGCATTCACCTTCGCCGAgggCTGCATCAGCATGTAGTAGATGCCAGCCAGGCCGTGTGCTGCGCCAACGTACTGCTTCTTGTGCCACTCGTAAAGCAGCGGACAGCGCTcagtcttcttctcttctttagaCAGGTTCTTCCCTGACTCCAGTATGGCAGTCACCACCTTTGAGATGGTGCTCTCATCCACTGTGTCTGAGCCGATCTCTTTGTTGACGTAGAGCAGGGCGAACAGGTACCCTGCCCGTCCGTACAGCAGCTCATCTGGCATGTCCGAGTCTGGACTGAGGACCGagcgctggagctgaagcaaCTTGGTGATGCATTCTTTAGAGTCGGCCTGGTTGTTGAGCCGGTGGTGGACGACTGCACCCACGGCTAGTGGTCCAGCATCTCCGCAGAGGAAAGTGACGCGGCGGCCGTTCAGGTTCCGCAGGGTGCGCTTGACGTAATCGAGGGAACGCTGAAGATGAGCAGCCTCGTTGCTCACGCGATGCAGCTGCAGATACAGCAAGGCAAtacCTGTCCAGCCTGTGTAGGTGGAGAAGTCGTGGGGGTCTGCAGTCTTTAGCCCTTCCTCCATCTGCTGGAGAAGATCTTTAATCTTGTTCTGTACTTTCTTCTGAAACGCCTCACTGATCTTTCCGCTCCCGTCGAAAGTTTCTCCGCTGCCGCCGCCGTTCGCCCCGGAGCCCGAGGACACGAGCACGCCCTGCTCCCAGTCCGGGAACGGGTTCGGGAACGAGCGCTCCTCCATCTCCGACTCGGAGGACGTGACGAGTTTCAGCCGCTTTGACATGTTGTCGCCCATTTCGACGGCGCCGCGCCGGGGCCAAACTTGAGCGGCCTGAGAAAACGCGTTTTTTCTGTCTCCCGTAGAGAAACCAGTCGCTCCTGATGCGGCTTGATAATGCTAAAAACAGTCTGTGGGGTCAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119461 lncRNA upstream 14761 7283189 ~ 7337692 (+) False G88798
TU119463 lncRNA upstream 14761 7283189 ~ 7337692 (+) False G88798
TU119457 lncRNA upstream 14761 7336781 ~ 7337692 (+) True G88798
TU119414 lncRNA upstream 181041 7171183 ~ 7171412 (+) True G88768
TU119406 lncRNA upstream 233826 7114543 ~ 7118627 (+) True G88761
TU119467 lncRNA downstream 30213 7426023 ~ 7477250 (+) True G88801
TU119536 lncRNA downstream 273445 7669255 ~ 7714191 (+) True G88867
TU119557 lncRNA downstream 343611 7739421 ~ 7740934 (+) True G88886
TU119583 lncRNA downstream 459059 7854869 ~ 7855150 (+) True G88906
TU119585 lncRNA downstream 461571 7857381 ~ 7857621 (+) True G88908
XM_022673437.1 mRNA upstream 25705 7268729 ~ 7326748 (+) False vopp1
XM_007233390.3 mRNA upstream 25705 7268730 ~ 7326748 (+) True vopp1
XM_007238663.3 mRNA upstream 1351305 5992126 ~ 6001148 (+) True LOC103044377
XM_007238662.3 mRNA upstream 1363955 5929824 ~ 5988498 (+) True LOC103043891
XM_022673424.1 mRNA upstream 1425998 5916645 ~ 5926455 (+) False LOC103042448
XM_022673443.1 mRNA downstream 332729 7728539 ~ 7735786 (+) True LOC111193320
XM_022673348.1 mRNA downstream 368067 7763877 ~ 7785181 (+) True vps16
XM_007248886.3 mRNA downstream 390512 7786322 ~ 7796482 (+) True rgn
XM_007248885.2 mRNA downstream 401523 7797333 ~ 7803815 (+) True LOC103027817
XM_022673447.1 mRNA downstream 413206 7809016 ~ 7817569 (+) True LOC111193321
trnap-agg_3 other upstream 109476 7242906 ~ 7242977 (+) True trnap-agg_3
TU119113 other upstream 2228727 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 2545780 4796822 ~ 4806673 (+) True G88486
TU119049 other upstream 2671616 4680113 ~ 4680837 (+) True G88473
TU119517 other downstream 182800 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 850404 8246214 ~ 8249434 (+) False sumo1
TU120304 other downstream 2206961 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 3289847 10685657 ~ 10686056 (+) True G89805
TU120819 other downstream 3292456 10688266 ~ 10688820 (+) True G89806

Expression Profile