RNA id: trnap-agg_3


Basic Information

Item Value
RNA id trnap-agg_3
length 72
RNA type tRNA
GC content 0.61
exon number 1
gene id trnap-agg_3
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 7242906 ~ 7242977 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggctcgttggtctaggggtatgattctcgcttagggtgcgagaggtcccgggttcgaatcccggacgagccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119414 lncRNA upstream 71494 7171183 ~ 7171412 (+) True G88768
TU119406 lncRNA upstream 124279 7114543 ~ 7118627 (+) True G88761
TU119407 lncRNA upstream 124279 7114543 ~ 7118627 (+) False G88761
TU119397 lncRNA upstream 199042 7043453 ~ 7043864 (+) True G88752
TU119395 lncRNA upstream 201394 7041094 ~ 7041512 (+) True G88750
TU119461 lncRNA downstream 40212 7283189 ~ 7337692 (+) False G88798
TU119463 lncRNA downstream 40212 7283189 ~ 7337692 (+) False G88798
TU119457 lncRNA downstream 93804 7336781 ~ 7337692 (+) True G88798
TU119464 lncRNA downstream 109476 7352453 ~ 7395810 (+) True G88799
TU119467 lncRNA downstream 183046 7426023 ~ 7477250 (+) True G88801
XM_007238663.3 mRNA upstream 1241758 5992126 ~ 6001148 (+) True LOC103044377
XM_007238662.3 mRNA upstream 1254408 5929824 ~ 5988498 (+) True LOC103043891
XM_022673418.1 mRNA upstream 1316451 5875704 ~ 5926455 (+) False LOC103042448
XM_007238656.3 mRNA upstream 1316451 5895613 ~ 5926455 (+) False LOC103042448
XM_022673419.1 mRNA upstream 1316451 5897707 ~ 5926455 (+) True LOC103042448
XM_022673437.1 mRNA downstream 25752 7268729 ~ 7326748 (+) False vopp1
XM_007233390.3 mRNA downstream 25753 7268730 ~ 7326748 (+) True vopp1
XM_022673443.1 mRNA downstream 485562 7728539 ~ 7735786 (+) True LOC111193320
XM_022673348.1 mRNA downstream 520900 7763877 ~ 7785181 (+) True vps16
XM_007248886.3 mRNA downstream 543345 7786322 ~ 7796482 (+) True rgn
TU119113 other upstream 2119180 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 2436233 4796822 ~ 4806673 (+) True G88486
TU119049 other upstream 2562069 4680113 ~ 4680837 (+) True G88473
TU119517 other downstream 335633 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 1003237 8246214 ~ 8249434 (+) False sumo1
TU120304 other downstream 2359794 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 3442680 10685657 ~ 10686056 (+) True G89805
TU120819 other downstream 3445289 10688266 ~ 10688820 (+) True G89806

Expression Profile