RNA id: TU119049


Basic Information

Item Value
RNA id TU119049
length 725
RNA type TUCP
GC content 0.49
exon number 1
gene id G88473
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 4680113 ~ 4680837 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCAGGCTACCCCCACAGACTTTGTCCAGCCCTGGGTACCCATCTATGTTTCTCGTACCCCTGTCTCTGCCTGTCATGGTTCCCGTCTCTGTCTATGTTCCAGTCTCTGTCACTCGTGGTTTTTCTGTTCCAGTCCCCGTCACcgtgtttgtttctgtccccATTACTGTTTTCGTTCCGGTCCCTTTGCCCAGTAATGTCCAGTCCCCGTTTTCTGTTCAGTCTCCTCTCGGGTGTCCTCTGTTCTAgtcttgtgttttgttttgttttttggtttccACCCTCTCCTGACCGGCTCCTGGGGGTTTGTTTTTTCGCGCCCCAggagttgcgcgttaagggGTGGGTtctgtcacgtggtccctgtctgttctcgtgtttctgtgtttatttacctttttctgtgcctgtctctgcttgtgcctgtgagtgtgtctcccacgtgatccgtgctcctcagtgtttcttgccctcacctgtgtatcatttgtaactccgccccttagccccaggtgttctctgtttcccgtgtgtgttacactatttatagtccgtgctccctttccctcgtgtcggttcttgtgctttgttagcctgttgTGGTTGCGTCTCTGTTCTccatgtttcttgttttctgtttagtttccgtttatttgtttatttttgtcttttgttatctgtataataaatacactcgcatttgcatccgctctcctcgtccctccT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119035 lncRNA upstream 106485 4573211 ~ 4573628 (+) True G88459
TU119030 lncRNA upstream 151789 4528099 ~ 4528324 (+) True G88454
TU118885 lncRNA upstream 226245 4452634 ~ 4453868 (+) True G88344
TU118860 lncRNA upstream 480969 4197327 ~ 4199144 (+) True G88327
TU118865 lncRNA upstream 506654 4159550 ~ 4173459 (+) False LOC111193316
TU119053 lncRNA downstream 195463 4876300 ~ 4897828 (+) True G88475
TU119055 lncRNA downstream 195463 4876300 ~ 4909040 (+) False G88475
XR_002650425.1 lncRNA downstream 359018 5039855 ~ 5041010 (+) True LOC111193318
TU119133 lncRNA downstream 612781 5293618 ~ 5296539 (+) True G88532
TU119139 lncRNA downstream 956183 5637020 ~ 5637262 (+) True G88538
XM_015602815.2 mRNA upstream 524718 4076926 ~ 4155395 (+) True rreb1
XM_007238635.3 mRNA upstream 621540 4051732 ~ 4058573 (+) True ly86
XM_022673398.1 mRNA upstream 730234 3756407 ~ 3949879 (+) True fars2
XM_015602809.2 mRNA upstream 1082732 3595795 ~ 3597381 (+) True ppp1r3g
XM_007238630.3 mRNA upstream 1095910 3572497 ~ 3584203 (+) True LOC103035299
XM_007238645.3 mRNA downstream 75021 4755858 ~ 4771689 (+) False LOC103038427
XM_007238642.3 mRNA downstream 75022 4755859 ~ 4777076 (+) True LOC103038427
XM_007238646.3 mRNA downstream 75022 4755859 ~ 4773682 (+) False LOC103038427
XM_022673410.1 mRNA downstream 75022 4755859 ~ 4773644 (+) False LOC103038427
XM_022673411.1 mRNA downstream 146607 4827444 ~ 4876837 (+) True wwp1
TU119068 other downstream 115985 4796822 ~ 4806673 (+) True G88486
TU119113 other downstream 230819 4911656 ~ 5123726 (+) False pard3
trnap-agg_3 other downstream 2562069 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 2897773 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 3565377 8246214 ~ 8249434 (+) False sumo1

Expression Profile