RNA id: TU119133


Basic Information

Item Value
RNA id TU119133
length 2902
lncRNA type intronic
GC content 0.42
exon number 2
gene id G88532
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 5293618 ~ 5296539 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAAACGTTAATTAGGTTGAGAGGTGTTTAAAATGGGAAGAGGAAAGATttgagaggaagagggagaagtGCGTGTGTTGAGTGCTGGAATCCTGCTTGAAAAAAAAGACCTTTAAAGTCAGACAAGCCTGTTGCCTGACTGCAATTAATCCATCAATGTCTCATGGCTGTAGTTATGTTCAGTAGTCACAACATAGGGGAGCACATGGGCTAAAGGCCTGGGGTAGAGTTAAACCATGTAGAAAACTACAGTACATTGGAACAGATGTATAGAGCTGCCTAGAACACAAGCAATtgactgagagagcacagtatATTGTCAGTATATGGGCCATGGAAGTTAACTGTGTGGCTTTTCTGTAAAATGGAGATGTAAAgcacaaatgttttaaaaaataaacagtttttaatttagacataaaTTCCTCAAGTGAGTTCATTAAGCCACACCTGgaattcctttttttccttttgctgGAGGTTTAAAACCCCTTCAGCTGCCCTAAATGTCCTGACTACTCACTGAACCCATAAAACACCTATCTTCCCTGGAGAATGTGATAGCTGTTCCTTGTGATGGTATTGTCCAAGCTTCTACTCAAATAGTAATAGATCACTGAAATTCTGCCACACCTGGAACCACTCAGAACCAACTGGAGTCCCTTAAACCATCTACGGAACCTCATTCGACTTTATTCTCAGTTGTAAAATTAACTGGAGCACAACTGCAGCAATGAATAATCCACCATGACCCACGCTGTGCTATAAACTAATGAACTGCATGTCCTTGTGGTTCGGGAAGGTAAATGGTGCCATATGGTGCAGGTCCGCGCATTACGGATAGCAGGTCGGCTGCCGTTTGTGTAAAAGGTGTAGTGACGGATACTGCCGCCAATTGGCTGTATGACTCAGCAGAACTGCCATGATGCCTGAGATGATTCAGAATATCTGCATCATCGCCGACGGCATCACAGTAATGGTACATATAAAAGCCCCATGACTGATTGAGCTTGGCTATTGGAAGATAATTAGGACAGGTGTAAAGAAGCAGGAGAATGGAGAGGAGGTCTGGTCTGCTAATGATCCAGGACAGGCAGGTAGGCATGGAGTCCTGAATGACCCCAGGGCCTCCCTCGTTCTTCCTGGGATACCAGAACACGACTTCCTCCTGGCCACTGTGGAGCTATTTTTAGCCTAATCACCCTTTTACCACTCCCCAACCAGCTGAATAAATTACATGTACACGTACAGGCCTTTGCAAGGCATCGCCTTGGTTAATGGCCTTTACAACACTGCCGGAGCCACACTAACGAGGAGCCAGCCACAACCCTCACATTAACTGCCGGCGGATTATTCATGGAGTTTGTGATACCTCCTCTTAACATTTAATGATAATTGCTCCTGGCCACTAAGTGCCCTTCCTGGTCATCTTTGTGGACTGATTAATTGAAGAGATATAGGTTGTATGCCTTGTCAACTTATTCGCTCATTTTCATTGCATGTATGACAGAGTTCTCGTACTGTGATCTTTTAGGATGCTCAAGCCTGTCCTGGCTTCTGTCCGGTTATGAGcttagagaaagagagcaagcaaacaagaaaagaaatgaatgtttttggtttatttatatttatttatttttttttcccttccctTGTGAGTCACGCTGAGCTCAGTATTAGATGTGTGATAGGAATTGTGGAGTAGCTTGCCCTATTGAGAGATGCTTttcaaaaaaatgaagagaggaCGACAAGGCAAGGGAACAATTACTAGTATATCTTCTCTGGCACTTCTCGCTCCGATGAGACACAATGCCAGCACTTGTAATGCAGAATGCCGCATAGGCTCAGCCGCATGATAATGCCGAGATTCTGAGTGAAGCAGATGTCATTCGTAATTCCTTGAACTGCAACGGCTGCCCTTGCTTTATCCGCTGTACCCCATTGCGTTTGGCATGCAAGCACGCTTCTGTGATCCATGCTTTCAAATTCAAAGCTTTGGGAGCTTCCTATTTACCTGCTATTTCAAGTATGTTGATTATGCTTGCTCTTCTGATGGCATATGCAGATCAGTGTTTTTTGGATCAGATACAGGatttctgaatttaaaaaaaatggctgcCTTTCAGTGTCCTTCAGAACTAGGAAGACCCTTCAGGGAAATAGAGAACATCTACACTTAAATCTAGATGCAGATGAGTTTCATTGTCAAATAAATTGCTTCATATCTTAGCTGTAATCAGCTACATACTCTGCCTGCTGGAAATAAAGTGCCTCTGGAAGTGCATCTTTAAGTTTGTGTCCTCTTGGACTATGTTGACCATGCTGGTTGTGGAAGGTGTTCTGGTACATTGTTCCAGTGATTACTATAACtatcaacattaacatatgAACATATGCATTTGGTGAGCTTGGATTTTCCCCTGTGTAAAAGCAACCCATATAATGGGAGAACTTATGTACCAAAGCAAACAAAGTATATGCATTTCAGTTTCtcatcattgtcctgttgagtAAAGAGATCTAATATTCAAAATGACCTTATTCCTATTACCTAcaaatttttatttactttggcCTACACATTTTTTTGATTTACAGACAGAATGCAATTACATGTCTCCCTTGAACTTTGTCTCCATACCTGCTCACTCACCAGAGTCACCTGACCTGACTCACCAGACCTAAGTTCAGTTTGAGATGGTCTAGTTTAACCTCAAGAAGTACTGTAATGTAAGAAATACAAAATTTCAATTCACGTTATTTTGGAATACTAGCCTGATTAGTGTGAAGGTCTGTTTCTCTTGTGCTTCTCTTGTATTGGTCCCTCTCTTGATATGAGAGATTTGTTTAAGCCAGGCTTGCTTAAAATAGCTTGGACCTGCATTGCTGCTTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650425.1 lncRNA upstream 252608 5039855 ~ 5041010 (+) True LOC111193318
TU119055 lncRNA upstream 384578 4876300 ~ 4909040 (+) False G88475
TU119053 lncRNA upstream 395790 4876300 ~ 4897828 (+) True G88475
TU119035 lncRNA upstream 719990 4573211 ~ 4573628 (+) True G88459
TU119030 lncRNA upstream 765294 4528099 ~ 4528324 (+) True G88454
TU119139 lncRNA downstream 340481 5637020 ~ 5637262 (+) True G88538
TU119146 lncRNA downstream 549072 5845611 ~ 5902704 (+) True G88541
TU119247 lncRNA downstream 710556 6007095 ~ 6015307 (+) True LOC111193319
XR_002650426.1 lncRNA downstream 711534 6008073 ~ 6014265 (+) False LOC111193319
XR_002650427.1 lncRNA downstream 711552 6008091 ~ 6014265 (+) False LOC111193319
XM_007238649.3 mRNA upstream 384586 4889276 ~ 4909032 (+) False cul2
XM_007238650.3 mRNA upstream 384644 4889274 ~ 4908974 (+) False cul2
XM_022673412.1 mRNA upstream 384644 4889735 ~ 4908974 (+) True cul2
XM_022673414.1 mRNA upstream 384644 4889735 ~ 4908974 (+) False cul2
XM_022673411.1 mRNA upstream 416781 4827444 ~ 4876837 (+) True wwp1
XM_007238653.3 mRNA downstream 431979 5728518 ~ 5821874 (+) True nrp1
XM_022673415.1 mRNA downstream 431979 5728518 ~ 5821874 (+) False nrp1
XM_022673416.1 mRNA downstream 535294 5831833 ~ 5874724 (+) True itgb1
XM_007238660.3 mRNA downstream 535295 5831834 ~ 5874724 (+) False itgb1
XM_022673418.1 mRNA downstream 579165 5875704 ~ 5926455 (+) False LOC103042448
TU119113 other upstream 169892 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 486945 4796822 ~ 4806673 (+) True G88486
TU119049 other upstream 612781 4680113 ~ 4680837 (+) True G88473
trnap-agg_3 other downstream 1946367 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 2282071 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 2949675 8246214 ~ 8249434 (+) False sumo1
TU120304 other downstream 4306232 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 5389118 10685657 ~ 10686056 (+) True G89805

Expression Profile