RNA id: XM_007238660.3


Basic Information

Item Value
RNA id XM_007238660.3
length 5200
RNA type mRNA
GC content 0.41
exon number 16
gene id itgb1
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 5831833 ~ 5874724 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTCCTGAGTGCGGCTCTGGTTCTGCTGGTAGCTGCTGGTTAAGTTGGAGTGAGTATTAGTGGGTAAACTGGGCTGAGGTGTTGTTGGAGTAACCGGCTGCTGATACCGGGAGAATGGAGTGAGCGGGTCCGGTCCGTGGTGGGTCGTAAGCGGAACAGAGAGGGGGGATCGCGGGGGGCTGAGAGGGCTGAGAGCCGCTGGCGAGGCTCATAGAGCGGAGAGGAGAGGGGGTCCAGCCTGCTGAGCGCTGCGAGAGAAAAACACCACAAAATCAGAAGAGTTTTAAGATGGACCTTAAACTACTTTTCATTTCAACGTTGTTAGGAGTTATTTGCTACAGCAGTGCCCAGCCAGAGGGGAACGAGTGCATCAAAGCTAATGCAGAATCCTGCGGGGACTGCATCCAAGTGGGGGCGAAGTGTGGGTGGTGCACGGATATAAGTTTCCTAAAGCAGGGAGAACCTACATCAGCCCGCTGTGATGAGCTGGAATCTCTGAAAAAGAGAGGATGTGTGGCAGCCAAGATCGAGAACCCTCGAGGCAGCCAGAGGACCCTCAGAAACAAGCCTGTCACCAACCGCAAGAAAGGAGGAGAGAAGCTCAAACCTGAGGACATCACCCAGATCCAGCCACAGAAACTGTCCGTCAGCCTTAGAtctgGAGAGCCTCAGAAAATAGACCTAAAGTTCAAAAGAGCCGAGGACTACCCTATAGACCTGTATTACCTTATGGACCTGTCCTACTCCATGAAGGATGATCtggaaaatgtcaaaaatttAGGCACCAGCCTGATGCTGGAAATGTCCAAGATTACCTCTGACTTCAGGATTGGGTTTGGCTCTTTTGTGGAGAAGACAGTTATGCCCTATATCAGCACCACTCCCGCTAAGCTTCTGAACCCCTGCACTGGAGACCAGAACTGCACCAGCCCTTTCAGCTACAAGAACGTCCTGAAGCTCACCAGCAACGGCCAGCAGTTCAACACTCTTGTGGGACAGCAGCAGATCTCTGGCAACCTGGATTCTCCAGAGGGGGGTTTCGATGCCATCATGCAAGTGGCCGTTTGTGGGGAACACATTGGCTGGAGAAATGTCACACGTTTGCTGGTGTTTTCTACGGATGCTGGTTTCCACTTTGCTGGGGATGGAAAACTGGGTGGGATTGTGCTTCCCAATGATGGCAAATGCCACCTGGAGAACAACATGTACACTATGAGCCACTATTATgactACCCTTCCATTGCCCATCTGGTGCAGAAACTGAGTGACAATAACATCCAGACCATCTTTGCTGTAACAGAGGAATTTCAGCCTGTTTATAAAGAATTGAAAAACCTCATTCCAAAATCTGCTGTGGGAACACTGTCAGCTAACTCCAGCAATGTGATCAACCTCATTATTGATGCCTACAATtctctgtcctctgagGTGATTTTGGAGAACAGTAAGCTGCCTGAAGGAGTGACCATCACCTACCAGTCCCACTGCAAAAATGGAGTGGTCAGTGTTGGAGAGGATGGACGAAAATGCTCCAATATCTCCATAGGAGATGAGGTGTACTTCAGTATAAACATCACTGCTCAGGGCTGCCCCAAGCAGGGCAAGTCTGAGTCATTAAAGATCAGACCGCTGGGCTTCACTGAAGAGGTGGAGATCAAGCTGAGCTTCATCTGTGACTGTGAGTGTCAGAAGGATGGCATCCCCAACAGTGATCTCTGCAATAACGGCAACGGCACCTTCGAGTGCGGGGCCTGCAGGTGCAATAAGGGTCGTATTGGCCGAGAGTGTGAGTGCAGGAAGGACGAGGTGTCCAGTGAAGACCTGGACAAGAACTGCCGCAAGGACAATGGCACAGATCTCTGCAGCAACAacggcgagtgtgtgtgtggaaagtgTGAGTGTAAGAAGAGGGAGAATCCTGAGGAGTACTACAGCGGAGAGTACTGCGAGTGTGACAACTTCAACTGTGACCGCTCCAACAACAAGCTCTGTGGAGGTCATGGGCGCTGTGAGTGTAGGGTGTGCATTTGTGATGCTAACTACACCGGAAGTGCATGTGACTGCTCTCTGGACACCTCCACCTGCTTGGCCTCCAACAATCAGATCTGTAATGGCAGAGGCAATTGTGAGTGTGGTGCCTGCAGGTGCACTGACCCCAAATTCCAGGGACCCACCTGTGAGATCTGCCCCACCTGCCCTGGAGTCTGCACTGAGCACAAGGCGTGTGTGCAGTGCAGGGCCTTCGGTACAGGAGAGAAGAAGGACACGTGTGATCGAGAGTGTAACTACTTCACTCTGACCAAAGTGAAAGACCGGGACAAGCTGCCCCAGCCCGTTCAGGCCTTCCCACTCATGCACTGCAAGGAGAGAGACGCCAACGACTGCTGGTTCTACTACACCTACGCCGTCAATAACAACACTGAGGTCCACGTCGTTGAGACTTTagAATGCCCGGCGGGTCCTGATATCATCCCCATCGTGGCAGGAGTGGTGGCTGGAATCGTGCTGATTGGTCTGGCTCTTCTGTTAATCTGGAAGCTGCTCATGATCATTCATGACCGCCGCGAGTTTGCCAAGTtcgagaaagaaaaaatgaatgcTAAATGGGACACGGGAGAAAATCCAATCTATAAGAGTGCTGTTACAACTGTGGTCAATCCCAAATATGAAGGCAAATAATGGACACCTCTTCACTGTGCTCAGAACAGTATTCTTaaattgacatttaaaaaaattattctcTTCCATTGAaatcttcattttactttattttgtagaaaagtgcattttatatGGTATCACAGCATTAAGACTGTAAGACACTTACAGTCATATGCAAAAacttggacacccctgatcaaATGACGTTTTGTTGAATGTAATAGAAGTAAAGTCTACGTTACCTTCTAAATATggcacattttaaaacacaagTTCAATGTATTTGCTGAATTTAGCATATTATACATAGTATGCATATTAAATGTGCCATACATGTTGTCATTTTAACTTTATGTTTGTGCAGAATAATAGGATGAGTACTTAATTTCACTCTTTTGtacaggggtgcccaaattttgGCATACGACTGTCTGTGTCTTCTTTAATTCATTGCAAAATGTGTACagtttgtatagtttttttgcATCTGTTTCTTTTATCTTAAGCAGGACATTTATGCCTTCTCATAGCGATGCaagactttttcttttattattgcaaGGCAGAGAGGCCTATAAAGCGTTCATAAGCGGTACATGAAGTATCAGACAAGGTTTTATGAAGATAGTTAATGATTATGTGATTCTGTGTAGGCCCTGATTTGTCATTGTGCTGCATTAGACTGGGTGTTTGAATATAATTCTGGTACGCAACATGCCATTAACAGTCTGAACGTGATGTAACGCATCAGTGATTGGACACTCGTGACAATCGGTTTATTGGTACTGTCTAttgttattctgatttttttttctatgttattGACTGTGCATAGGTACATGCCTACCTGTCTCAGAAGTATTTTACAAGCTATTCCACTTATGTTATCAAACAGCAGTTCTAGTGGTTATGCTGGTATCTCTTTTAGATCTTAAACCCCTAAAGCATACAGCATTTTAATCTTAAAACTGTTtagaatcatttttatttttttgtgtagtcccactgggctctattttagggccTGTAAAACTATTCGGTTTGACAGCAGTAGTTATTAGAGTTAAGAGAACTGAAATGTGGGCTTACCGTACATACTGAGTTTAAGGTGTTAATTCATTTTGCCACAATTGtcttgtgtattgtgtgtatatatatatatatatatatatatatatatatgaagaatTGTCATTGAAGTCATGTGGAAATGTATCCTGAcactatataaacaaacaacTGCCAGATACAAGTCATGTTAAAATATAGGATTACAACCTTTTTGcttgactatatatatttttatatattttttctttctcttgatGTGTACTATAATGCTTGTTCTGAGCAATTATGCAACTCTGGATGTATAATCAATGAGAAAATACCACACTATTGTGTCACCATGTGGTTGTAAAAAGCCAATAGTTGAAAAATCAGTTGAAATTACATTGATTATTAATATCTAGTTAAGCAATGGAGCCCAAAACTGATGTATTAGATATCCCTTGGATTGGTCAATTGGATGCACAtttgttcaaaagtttggaatcacctttagtcatttttatttatttttttattattttattaccaatattttcttacaaacTTTAAATACTACATAAAGTACACCAAGGTATattcttattgttattttactcAGTAGTTCATATATTTctagaaaaactttttttttttttagtaaaaacagtgtttttcattgtaatTATCTATTATCTACTCACATGGCTCCTTCCCCTCTATTGTACAAACGCTCTCAGTGAACTATATGTACAGCACAGCAGTAGCAGTAAAAGCCACCATGAACATAATTTGCTCCAAATGTTGCTTAAGTTTTGTACAAAATGAGAagcatatttttacatttatcttCAACTGAATGGgactttttgtttaaaacattaaaatgtgttttttacattatttttaagcactgattccaaacatttaaacaatcgCGTAGGTATGAATATTTACATACTTCAGttaaagttttatttgtttatcttggGCCTAAAGAGGATCCCATTTTTACAGTGGTGCATTGACATTTACTGAAAATAGTACTGGACATGTGCTGTATATCCTGTAATATGAGTGTCATGTGAGTCTTGTCAGGTTAGGCTGATAATATTCTTTGATATTTAAAAGGAATTTCCTCCCTAGATTTTACACCACTTACgcctttttataataaaatatttagatttaaggattttttttttgtttcatggtTCTGCCATTCAGATTTGTATTATTCTGAGTTTTAATGGCTTCATTTTAAAGGTACGCAATaatgtatacatatttaatgGCATACATTATAGTAGTTGAAGCCATTGTTCTTATTTTGTCATGCAGCATCTAGTAATACAAAattgaaaatattgaaaaatttgaaagatattaaaaattattactAGCTTGGCAAATGCTTCTTGTTTTTAAGTGCCTTTTCAACATGTTCACTTATTGTTATGCTgttttgaatttatttattaaaaacaaaaa

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function
GO:0001968 fibronectin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119139 lncRNA upstream 194572 5637020 ~ 5637262 (+) True G88538
TU119133 lncRNA upstream 535295 5293618 ~ 5296539 (+) True G88532
XR_002650425.1 lncRNA upstream 790824 5039855 ~ 5041010 (+) True LOC111193318
TU119055 lncRNA upstream 922794 4876300 ~ 4909040 (+) False G88475
TU119053 lncRNA upstream 934006 4876300 ~ 4897828 (+) True G88475
TU119247 lncRNA downstream 132371 6007095 ~ 6015307 (+) True LOC111193319
XR_002650426.1 lncRNA downstream 133349 6008073 ~ 6014265 (+) False LOC111193319
XR_002650427.1 lncRNA downstream 133367 6008091 ~ 6014265 (+) False LOC111193319
TU119249 lncRNA downstream 136267 6010991 ~ 6015307 (+) False LOC111193319
TU119268 lncRNA downstream 239791 6114515 ~ 6148334 (+) True G88637
XM_007238653.3 mRNA upstream 9960 5728518 ~ 5821874 (+) True nrp1
XM_022673415.1 mRNA upstream 9960 5728518 ~ 5821874 (+) False nrp1
XM_007238652.2 mRNA upstream 368809 4911678 ~ 5463025 (+) False pard3
XM_022673418.1 mRNA downstream 980 5875704 ~ 5926455 (+) False LOC103042448
XM_007238656.3 mRNA downstream 20889 5895613 ~ 5926455 (+) False LOC103042448
XM_022673419.1 mRNA downstream 22983 5897707 ~ 5926455 (+) True LOC103042448
XM_007238657.2 mRNA downstream 35519 5910243 ~ 5926455 (+) False LOC103042448
XM_022673420.1 mRNA downstream 35774 5910498 ~ 5926455 (+) False LOC103042448
TU119113 other upstream 708108 4911656 ~ 5123726 (+) False pard3
TU119068 other upstream 1025161 4796822 ~ 4806673 (+) True G88486
TU119049 other upstream 1150997 4680113 ~ 4680837 (+) True G88473
trnap-agg_3 other downstream 1368182 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 1703886 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 2371490 8246214 ~ 8249434 (+) False sumo1
TU120304 other downstream 3728047 9602771 ~ 9610254 (+) True G89453
TU120818 other downstream 4810933 10685657 ~ 10686056 (+) True G89805

Expression Profile