RNA id: TU119053


Basic Information

Item Value
RNA id TU119053
length 3076
lncRNA type read_through
GC content 0.34
exon number 2
gene id G88475
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 4876300 ~ 4909040 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTTTTCTAGAGTAGATCTGAAGACTTTAGGTTAAAGTGTCGGTTTGGATGCTCACAAAATAAAGAGGCTCCCAGTGTAGTGATACAAAACATTACCTGTGTCCAAAACTGTGCCCTATTCACTCTATAGTGCACTACTCTGAAATTCTGACATTCTGAAGTGGTATTCTAAAACAGTGGACCACAAAAATCCCAAACCCGAAAATATAACACTATAATAAAtgcactataatatatattgtaaaaaatagtCTACCCTCCTACCAGCTACTAATTACCTGTAATTCACTTTGTTGTTTGGTTTAAAGATTTGCATGAAACATAGTTAAGGAAAACCGACAATTAGATTGTTATATATGCGACGGCAGATTGTCACATACTGAGCTCGTACTCACTCAGCTAGGTAGATGTGGTGTTCATTCAACACTCTATTATATTATTCTCCTGTAATAGTGCTTTGGAAATGGTGTTTTGGATTTTTGCATGTAGAGGAAAGGGAATAGGGTACATAGGGTTTTGGACACAGCtagtaaataaattacaactatatctaaaaaaaaaaaacatttattgtacGTTcccaattataaataaaatacagaaggGTAAATCTCCCAGGATGTGACATGTGCATGCTCTTCCCAAAAATGGTTAATCACAAAGCATATGTTGCTAGGTTGGACAGGTTTTACAGGATACTGGCAAAAATCTCCTTTAGGCTgatctgagatttttttttttttaataacaattttctttatttagaaaaGTGTTCTAGACAGTCACTTATCCAATATGATTTAATTCTTCATCTCTTTCTGGTTTTTAACTGGTTTGAAGACAGTTCACATACACATCTTAAAAATATGCCCGTTATTTAAcagcagtaaatataaaatatatttatacgtATATTCAAGCTAATTATACTAAGTCTATAGCATGAACCTTTCAGTAGAAACTGAAACCACTACACTTAATGGGTGAGAATaatcaaattaaacattttaaacattgcttgtttaatttaattgtagttttcccttaaacattttaaagaaggTGATTTGATATGCTTATTTCTCACAAAGATGAACAGAATTCTTGCCAGTGTTCTGTAAAGCTTGGCCAATTATCAACCATTGCTGTGAGAGGACATATTTGTACAAAGACCAAGTATAAAAATCCCTGTGGTTTAACATAAGTGAGTCTGAGTACTGTCTCTCTTGAGCTTTGCCACCAAGCATGTTTCACTTTGTTTTAATCTTTATCATTGTTTCAGGTTAATGTATTACTGCCTGTTTGACTTTGTTCTTGACATTTGATTGTTAAAGAGATGAACACAGGGATTCTGGACATATGATGCAATAGTCACATTTATACTGAAGATGTTCTGCCTAAAGCTCATCCTAAGGAACTGATGTTGTTGGACTCATCAATACTTTACCTTTAAAaattgacaaataaaaaaatgtatacctGTGTGTGGTATACatggtatatatttataccATTTTTATACCAGAGTTAtacagaactgtgttctctgaaatgatggtgcACCTCGCTAATGCTCTAGTTGCtgattgcaatcaaatccttacatcaaagctccaaaatctagcaaaaaaaggcttttttggacagtagagacagttactccaacataaGCAGGATATGCTTGTTTTAATATCCTTTATTTCATAAGAAtcaatgaatgagcagatgcattatgtgcttttttttttctttcttttttttaacttttacaaaGGACGTTATTACTGAGATTATTACTCTTTCCCAGGTCTCCACATTTTTCTTtcgtttttttcctttaaatatcGTATAAAAGCACCTGTAGTAGACATTTCACAAGCTTCCCGGAGACAGTCCAGGCCTCGGCAGAAACGGGAATTATAGAGGCTGTTTTGTTagtctagtttttttttctcaaatgtatttatttaattctttcttcttttttttggttattttcttTGTAAATGTGAAAACTACCAAAATCTGCCTCTGGTGCTTTCTGTCAAATAACTAGAGCAGGGAGCTGCTCTGTCCACTTAATCAAATGAGTTTATCAGCAAGCTACTGCTGTTGAATTTTGATCAAATCatgagagtaaaaaaaaatcagtatagtTGGTGGAATTCAGTTTGTTCATTAGTCTTTGTAAATAATGAATGTTAAAGTTACTCCTCACTGAAGAGTGAAGCTATACGGTAAGAGGACTCCATCGCTTCTTGTCTGTAGCTATTGGCTTGAACAGCAGCAGTTGCTAAGTAAAACCTCATCACCACGGTACTGTGCTTCCACCTGAAATCtacaactgaagaaaaaaaagtgtataacaCAAAAGACTAACTTGCAACtatcatagaaaaaaaaatacttaattggTTGTATTTGGAGCAGCAACATCAACAGGCTCTGTGATGCCTTGTTCCTATCAGATGAACTGTAACATATCACATGTAGATAGacactgtaaacactgtaaatgcCCCCAGCTGGAGATTtgtgtataaaatattaatttttaatctaCTTTATCCAGTTTAATAGACTCATTTGATTTATGGAAAATTGAAAACCTACCCTCCAATTTTGTCCTATGGCAGGAGACAAGAGGAGGGGTGGGGCAAATTGGCAATGGTATGGttttcagtaatttttttttcttttactttctttttgtttagttttttttttttttttttttcgttttcttGGGAGGGAAGGGGGTTATCAGTTGGATCTTGCCTGTGGAGAGAAccatatttaataaatgtatatgaCCATCTTTACATTGAATTTGATTTTGTTTCCGGTCTAATTCACCACACCACTCAACAATAGTAGAGTTAATCAGGAAGCACAAATCAAATGGCCTGTATTACCTGGTAAATCCAGCATCACTCTGAACTCATTCTCTAGTGTGATTATTATAATAAGGTTATGTTAACATACTACTAGGCTCAAGTGACCACTTTCTtcacttttattctttttaaatcGGATCTGTCAGCTGTATGTGGTCATAGATCATATTTGTAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119035 lncRNA upstream 302672 4573211 ~ 4573628 (+) True G88459
TU119030 lncRNA upstream 347976 4528099 ~ 4528324 (+) True G88454
TU118885 lncRNA upstream 422432 4452634 ~ 4453868 (+) True G88344
TU118860 lncRNA upstream 677156 4197327 ~ 4199144 (+) True G88327
TU118866 lncRNA upstream 712643 4161602 ~ 4163657 (+) False LOC111193316
XR_002650425.1 lncRNA downstream 142027 5039855 ~ 5041010 (+) True LOC111193318
TU119133 lncRNA downstream 395790 5293618 ~ 5296539 (+) True G88532
TU119139 lncRNA downstream 739192 5637020 ~ 5637262 (+) True G88538
TU119146 lncRNA downstream 947783 5845611 ~ 5902704 (+) True G88541
TU119247 lncRNA downstream 1109267 6007095 ~ 6015307 (+) True LOC111193319
XM_007238642.3 mRNA upstream 99224 4755859 ~ 4777076 (+) True LOC103038427
XM_007238646.3 mRNA upstream 102618 4755859 ~ 4773682 (+) False LOC103038427
XM_022673410.1 mRNA upstream 102656 4755859 ~ 4773644 (+) False LOC103038427
XM_007238645.3 mRNA upstream 104611 4755858 ~ 4771689 (+) False LOC103038427
XM_015602815.2 mRNA upstream 720905 4076926 ~ 4155395 (+) True rreb1
XM_007238651.2 mRNA downstream 13850 4911678 ~ 5463025 (+) True pard3
XM_007238652.2 mRNA downstream 13850 4911678 ~ 5463025 (+) False pard3
XM_015602813.2 mRNA downstream 13850 4911678 ~ 5463025 (+) False pard3
XM_015602814.2 mRNA downstream 13850 4911678 ~ 5463025 (+) False pard3
XM_007238653.3 mRNA downstream 830690 5728518 ~ 5821874 (+) True nrp1
TU119068 other upstream 69627 4796822 ~ 4806673 (+) True G88486
TU119049 other upstream 195463 4680113 ~ 4680837 (+) True G88473
TU119113 other downstream 13828 4911656 ~ 5123726 (+) False pard3
trnap-agg_3 other downstream 2345078 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 2680782 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 3348386 8246214 ~ 8249434 (+) False sumo1
TU120304 other downstream 4704943 9602771 ~ 9610254 (+) True G89453

Expression Profile