RNA id: TU118866


Basic Information

Item Value
RNA id TU118866
length 393
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id LOC111193316
representative False

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 4159550 ~ 4173459 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGTGAAAATGCCTACAGACAGGATAACTTAACTGTGTGGAATAGAGGTGGCTAATGGGGGCAGAGTCCAGCAGCTCTAACAGAACTACTAAACCTGCCAATTAACAGgactcccttatcactagtgatgccccaagtgatgtggggagagagcaccatcaacccacccagagagagcaatgccAGTTGTACTCTCCcgggctctggtagccgatggcaagctacatgaacaggattcaaaccggcgatcttctgatcattgtggcagcaccttagtaaataaataaactgaagatCATGATATACCGTATCGTTTTCATTTGTAATTCATTATTGATATGTGGTGTCAATATCGATAttgttattgaaacataggcgcTCTAAACTCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118824 lncRNA upstream 138051 3975729 ~ 4023551 (+) True G88298
TU118831 lncRNA upstream 159707 4000427 ~ 4001895 (+) True G88305
TU118819 lncRNA upstream 259991 3901026 ~ 3901611 (+) True G88294
TU118817 lncRNA upstream 310414 3850083 ~ 3851188 (+) True G88292
TU118816 lncRNA upstream 319385 3841883 ~ 3842217 (+) True G88291
TU118860 lncRNA downstream 33670 4197327 ~ 4199144 (+) True G88327
TU118885 lncRNA downstream 288977 4452634 ~ 4453868 (+) True G88344
TU119030 lncRNA downstream 364442 4528099 ~ 4528324 (+) True G88454
TU119035 lncRNA downstream 409554 4573211 ~ 4573628 (+) True G88459
TU119053 lncRNA downstream 712643 4876300 ~ 4897828 (+) True G88475
XM_015602815.2 mRNA upstream 6207 4076926 ~ 4155395 (+) True rreb1
XM_007238635.3 mRNA upstream 103029 4051732 ~ 4058573 (+) True ly86
XM_022673398.1 mRNA upstream 211723 3756407 ~ 3949879 (+) True fars2
XM_015602809.2 mRNA upstream 564221 3595795 ~ 3597381 (+) True ppp1r3g
XM_007238630.3 mRNA upstream 577399 3572497 ~ 3584203 (+) True LOC103035299
XM_007238645.3 mRNA downstream 592201 4755858 ~ 4771689 (+) False LOC103038427
XM_007238642.3 mRNA downstream 592202 4755859 ~ 4777076 (+) True LOC103038427
XM_007238646.3 mRNA downstream 592202 4755859 ~ 4773682 (+) False LOC103038427
XM_022673410.1 mRNA downstream 592202 4755859 ~ 4773644 (+) False LOC103038427
XM_022673411.1 mRNA downstream 663787 4827444 ~ 4876837 (+) True wwp1
TU119049 other downstream 516456 4680113 ~ 4680837 (+) True G88473
TU119068 other downstream 633165 4796822 ~ 4806673 (+) True G88486
TU119113 other downstream 747999 4911656 ~ 5123726 (+) False pard3
trnap-agg_3 other downstream 3079249 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 3414953 7578610 ~ 7579960 (+) True G88849

Expression Profile