RNA id: XM_007238642.3


Basic Information

Item Value
RNA id XM_007238642.3
length 4810
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC103038427
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 4755858 ~ 4777076 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAGAACAGAGGGAGCgagggaaagagggagggagacagacagagagagagagagacagcctgGGAGGGATATTTATCCAAATAGAGATGTGTGAGTGACTGCTTGCCTGTCTGTCCGCCCCACAGGACCCTTTATTTCCTCAGGGATGTGGCACGTCTGAGCAAAATGCTTCCTAAAACGAAGAGGATCCTCCAGCCTTCAGAATTTAGCAGCTATAGGAGAATAAACAGTGGAGTTGGTGTGAAGGGTCATCATAAGTCTACGTGTGCTGACAGATTGTCCATCCAGGCCTAATTCTAAGACGGAACAGGCGAAAGCAGAGGTGCAGATCAGGATTACGGCGTATCACAGGAAAAGAGTCCTCTAAACGGATGGCGACACCATTTGTGCCAGTGCCTATACCCATGGAAAGGACTCTGCCGGGGGCTACCAATCCCCGGCGACCCCAGAGGGCCTCGAGTCTAGGTAGTGCATCCAGCAGTTCAGAATCCTCCTCCACTAAAGGCCCGGGCGATGAGAGCAGCTCAGGGAGGCGAGGGAATAGCAGTGGAGCCTCTGGTTCAGACAGAAGCTGCTTCACTCCACCTTGTCAGAGCCCCATCACTCGGGCCAGGATGAACGGCTTGGACACTACAGTGGAGTACTCCAGCTGTACACGGCCGGACACGCCGCCTCAGACCCCCAGCTGGGAGGAGAGACCCATAACCCCGACTGTGTTGGGTTACGAGGTCATGGAAGAACGAGCCAAGTTCACGGTGTATAAGATTCTGGTGAGGAAATCTCAGGAGGAGACCTGGGTGGTGTTTCGGCGCTACACAGACTTTTCCAGACTCAATGACAAGTTAAAGGAAATGTTTCCTGGATTCCGGCTTGCTCTGCCTCCTAAGCGCTGGTTTAAAGATAACTATGATTCAAACTTCCTGGAGGACAGACAGTTAGGCCTGCAGGCCTTCTTGCAGAACCTGGTGGCCCACAAAGACATTGCAAACTGCGTTGCTGTACGAGAGTTCCTTTGTCTGGATGACCCACCAGGTCCTTTCGACAGTCTGGAGGAGAGTCGGGCGTTCTGTGAGACTCTGGAGGAGAGTAACTATCGGCTGCAGAAGGAGCTGctggagaaacagagagagatcagCACCTTAAAGAAGATTCTGGAGGAGAAAGATCTCTACATACACTTGCTTGAGAAAAGGGCCAAtgGCGAGTCTTTGACTCCGGAGAGTCCTTGTGGTCTGTCCGCTCAAGGCAGTGAGAGCAGTGTGGATGCAGACGGAGAGGTGGAGTCCTCTACAGCCGAGGCGGATCAGGATATGCCAGATGAAAATGGCTGTGAGCAGCGGGCACCGCCGCAGATCTCCTCAACATGCTGGTGTGGACCGGCCATTAGCCGCTCTCCTCCAGTTATCCAGGTCACTCAGCTGGAAAAGTGAACTACAACCAGTACTGCACttcctttttctctgtttttcccctctctgtctctgtttctccctcttcCTGTCTTCTTGCCCCTCCCATCCCTTCCCTCGCTCTCTCCATACTGCAGTGAGACGATGCTAGAGTCTCCTAACCTCGTGGTTAATGATAAACTGTGACAGACGCACAGGTGCTGTCTGTCTGCAGTCAGCATCAGTCTCTTATAACACAGACGGGCAAGCTAACCCATGAGACTCCTGGAAGGATGTGATAATCTGTATGGGGGCCTGAAATCTGCAACATCTGGAAAGACAGCATGAGAACATGAGAATGAGCTGTGGATAATCTGAATGTGCTCCACTATTTTcttaacaaatatatttatctcTATATTTCAAGCCCATCAAGTCATGGATTGGCTTCTTGGATTTCAGGACTGGAATATCGACCATACAGTGGACATCCTGCCAAAGAGGGCTTCTCGACCAAAACATCAACAGACAGAACTTCATTTAAGCTCCCTAAAATCCAGAGACAAGAGTTTGTGTAATATTAAATGTGTGACAATCCAGAAACTGATAGATTGCAtgtattctctcactctctcctctctcctgtgtgaaaaCATAGCAGAGCAGTGCCCCTATTGGCTAATAAAGCTACTGCAGCCATCAACTCAGGCAGGACAGTGACGAAGACTGAGGTTTCCCCTgtgctgctgaaaaaaaaagaaaaaagaaacaacaggGCTGTGATTATGTGAACTGATATGTAGAACTATAGGTCTTTAGACTGACGATCTTTGGTTTAAAACCTCTGACGCAAAATTTTGCCTTTCATGTCATCATGTTGCTTCGTACTGCCATTGCTTCATCGACAACAAGAGGGCAATTCATACATGTGTAGGAATACAAATATGCTGCACGTGGATTAGccgagagtgtgtgttgttttggttcTTTCTTTGTCACTCATTGTGATTTTGTGAATTTAGAATTTATTTTGTcacccttgtttttttttatcgcaCAATTCTTTCGCGGTAGTGATTGTGAAAGTCTTAACACTAAGTGAACTTTAACAGCCATGCGTGCAGGTCGTCTGCGAAACGGGATTTGTTAAAATGGAGTGAATTCAATGCCTTTTATTAGCATCAGGTATTCAGCTTATAGGATCATATTTTGACCTATAGGAGtaatctattattatttaatcataatttaactTCTACATTTCATCTCCCTTTACTCAAACAACCTAATTTACACAGTCATATCAGAATATTGTAACCATCTCTTTGTTAAAATTAATTGTAATAATAGCAGTGCACTATAGGGATCATTTTAGCTATTTAGAGAACTATCAATATGATCATCTCTCTAAAAATGTTGATGAACCCCTCTTTAAATGATCTTTGTACTTTTAAATCCCTCGTGTACACACTTTTGTAGTGTAATCCAAATTTGTAGTGTAATCTAAATCCAAAATGACAAGAAAAAAACCTATTAACTTTCACCTGAGGTATCCATGCTCTAAATAcaaccttttttaaaacatataatcTATTCTGAAGTTTAAGGCAATAAACAATGAAGTATGTGGGTAGAATTGCTTCAGCTTGTCAGGTTAAATGATTATTAGTttgctttttttagtttatttctttccagATTGAGTATAGGGTAGCTAAGAATGAGTTTATGTGGGTGGAGCATATCATCGCTGTCTTGCAAAAACCTTGTGTCTCCATTCCTTTTTTGAAATGTTCCAATTTTCACTTGTTGACAATTTCAATCTGacagttgttctttatattgctCTATTTCttgtttacattgacttctgttgAAAGTGTTGTCCTTCTTATATAAAGctgctattttggagatactCTATATAGGCAAAACTATTCGGACACCTGCTTATACATAGGGTCTTCTGAAATGAAGGGTATTATTGTGCCCTATGTTTCTACTACgcagaattaaagaaaaaatgaaatgggaaaccaaaaaaatgtaaactgctttttttggagtaactgtctctactgcccCTCATCTCATTGCTGGGGGATTTATACCCCTCAATCCCACATATGGTGCTTTTGAGAATCCTAATTTTTGGGCAGTACTTTTCTGCAGGgaatagacaagctgtgtgtctAGTCGAATTAAAGTACAGTAATGtccaaaaatctgtttttgtgtgacagcgatgattgattgattgcttTATAGGTTAATATAATTTGAGCATTACAACCTGAGCCAATCACATAGGCTCTCATGGTATCTTATGGAATGAATGTGTTTGATATCACAGTAAGAGTCAGTAGAggttgaaagaaaaaaaggaaaaaaagaatctCTACTAAGTAAAATGTTGTTGGGTTCACTGAGGGTTACACTAGTAGTAGTGATGTGTTCGTTAATAAGTACACAGATTTAGAGGATCACTATCAAAGCTGTACTTGGCATAGTCCAAGCCAGGAAGCTGCTGAGTCACGGTTCGTAAATGACTGCAGTAGGTCACATGTCGCACTTTAATGTCCCTAGGGATTGTGGGGTATGATGCTTCTAGGCTAGCAGGTGGAGCTTCTTTAGAATTGAATGCTAATTTTAGCTTCAAAGGAAGCAAGTGCAGTGCCTTTTCCCTGCTGTTCATATATTCATGCTTCTGTATGTGTTTATGTTCATCTGCAGGTCCTTTCCAATCCAACCTCAGCATCCCTGCTAACATAGTGCCTTGCATCCCCTTCccttattgtaatttttatctACGTctcacttttttcatatttactcGAGTTGGCACCACCTTCTAAAGTAGTTTTCATGGGTGTTGGCAAATTGTAAGGTTTTAAATGATGCAATCTAAATAGATTTATTGCCATTTGTTGTTTATTGATCTCTGTAggattttatttgatatatatttaactaaactgcACATTCAACGCTTGTGACAACGAATGAAGTTAATGTAATGTTTCCTGTTGATTAGGTTCAGCTGAGAGGAATTCACGTGTTTTGAGTTTATCTTAGAGTGTACCTTAGAGTTTACCTTATGCAACTGCTTAGTAGATGCAATTCATATGTGTCAACTTGTCGAAACGTGTCAGTCTGTAAGTATGTCCTGGCCAGTAACTGTTCAATGGTCCtgacatttgtttttcttttctgtccTGTCAAATATCCATATTCCTATattatcccccccccccccccccccactaatGGCTGTTGATGAAAAGTAGGCTAGGACTGGGGATGTGATATTTGTTTTCAGATCATCAGAACTTATGCAAATGTGTTTGTCACATAATAATGATAGATTATCTTTTGAGGGATAATAAATGTTTCCAGTGGAGGTATTTTCACCTCATTGTAA

Function

GO: NA

KEGG:

id description
K17928 SNX16; sorting nexin-16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119035 lncRNA upstream 182231 4573211 ~ 4573628 (+) True G88459
TU119030 lncRNA upstream 227535 4528099 ~ 4528324 (+) True G88454
TU118885 lncRNA upstream 301991 4452634 ~ 4453868 (+) True G88344
TU118860 lncRNA upstream 556715 4197327 ~ 4199144 (+) True G88327
TU118866 lncRNA upstream 592202 4161602 ~ 4163657 (+) False LOC111193316
TU119053 lncRNA downstream 99224 4876300 ~ 4897828 (+) True G88475
TU119055 lncRNA downstream 99224 4876300 ~ 4909040 (+) False G88475
XR_002650425.1 lncRNA downstream 262779 5039855 ~ 5041010 (+) True LOC111193318
TU119133 lncRNA downstream 516542 5293618 ~ 5296539 (+) True G88532
TU119139 lncRNA downstream 859944 5637020 ~ 5637262 (+) True G88538
XM_015602815.2 mRNA upstream 600464 4076926 ~ 4155395 (+) True rreb1
XM_007238635.3 mRNA upstream 697286 4051732 ~ 4058573 (+) True ly86
XM_022673398.1 mRNA upstream 805980 3756407 ~ 3949879 (+) True fars2
XM_015602809.2 mRNA upstream 1158478 3595795 ~ 3597381 (+) True ppp1r3g
XM_007238630.3 mRNA upstream 1171656 3572497 ~ 3584203 (+) True LOC103035299
XM_022673411.1 mRNA downstream 50368 4827444 ~ 4876837 (+) True wwp1
XM_007238650.3 mRNA downstream 112198 4889274 ~ 4908974 (+) False cul2
XM_007238649.3 mRNA downstream 112200 4889276 ~ 4909032 (+) False cul2
XM_022673412.1 mRNA downstream 112659 4889735 ~ 4908974 (+) True cul2
XM_022673414.1 mRNA downstream 112659 4889735 ~ 4908974 (+) False cul2
TU119049 other upstream 75022 4680113 ~ 4680837 (+) True G88473
TU119068 other downstream 19746 4796822 ~ 4806673 (+) True G88486
TU119113 other downstream 134580 4911656 ~ 5123726 (+) False pard3
trnap-agg_3 other downstream 2465830 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 2801534 7578610 ~ 7579960 (+) True G88849
TU119784 other downstream 3469138 8246214 ~ 8249434 (+) False sumo1

Expression Profile