RNA id: TU119030


Basic Information

Item Value
RNA id TU119030
length 226
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G88454
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 4528099 ~ 4528324 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acaatttgtcctcttttgaactctggtatgtcacccataatgttgtgtgcattgcaatattttgagcaaaactgtgctcttaccctgctaattgaaccttcacactctgctcttactggtgcaatgtgtaattaatgaagattggccaccacgctgctccaatttagccatgaaacctcccacactaaaatgacaggtgtttcagtttcattgtccaacccctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118885 lncRNA upstream 74231 4452634 ~ 4453868 (+) True G88344
TU118860 lncRNA upstream 328955 4197327 ~ 4199144 (+) True G88327
TU118865 lncRNA upstream 354640 4159550 ~ 4173459 (+) False LOC111193316
TU119035 lncRNA downstream 44887 4573211 ~ 4573628 (+) True G88459
TU119053 lncRNA downstream 347976 4876300 ~ 4897828 (+) True G88475
TU119055 lncRNA downstream 347976 4876300 ~ 4909040 (+) False G88475
XR_002650425.1 lncRNA downstream 511531 5039855 ~ 5041010 (+) True LOC111193318
TU119133 lncRNA downstream 765294 5293618 ~ 5296539 (+) True G88532
XM_015602815.2 mRNA upstream 372704 4076926 ~ 4155395 (+) True rreb1
XM_007238635.3 mRNA upstream 469526 4051732 ~ 4058573 (+) True ly86
XM_022673398.1 mRNA upstream 578220 3756407 ~ 3949879 (+) True fars2
XM_015602809.2 mRNA upstream 930718 3595795 ~ 3597381 (+) True ppp1r3g
XM_007238630.3 mRNA upstream 943896 3572497 ~ 3584203 (+) True LOC103035299
XM_007238645.3 mRNA downstream 227534 4755858 ~ 4771689 (+) False LOC103038427
XM_007238642.3 mRNA downstream 227535 4755859 ~ 4777076 (+) True LOC103038427
XM_007238646.3 mRNA downstream 227535 4755859 ~ 4773682 (+) False LOC103038427
XM_022673410.1 mRNA downstream 227535 4755859 ~ 4773644 (+) False LOC103038427
XM_022673411.1 mRNA downstream 299120 4827444 ~ 4876837 (+) True wwp1
TU119049 other downstream 151789 4680113 ~ 4680837 (+) True G88473
TU119068 other downstream 268498 4796822 ~ 4806673 (+) True G88486
TU119113 other downstream 383332 4911656 ~ 5123726 (+) False pard3
trnap-agg_3 other downstream 2714582 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 3050286 7578610 ~ 7579960 (+) True G88849

Expression Profile