RNA id: XM_015602809.2


Basic Information

Item Value
RNA id XM_015602809.2
length 1587
RNA type mRNA
GC content 0.56
exon number 1
gene id ppp1r3g
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 3595795 ~ 3597381 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGGTGCTGAATACGGTTCTCCTGCAGGTGAAGAATCATAATGAAGTGCTTGATTTGGTGCTGTTTGATTAGGTTTAAAGAGCCCCACCAGTGGATTAAATAGGATGCAATGCTGTAATAAGTGTGTCTATGTGTGGGAATGTGTGTATGGTGCTATGGTACTAACTACAGTAGGCTTCCTTTAGTAAAGGAAATGTGATATGGTGCACAATAAATTAAActgtatttgttattattttcagTAATGCATTTATTCCATCTATTTAAGTTTTCAGTTTTAGCCACACCCCCTCTAGAATATACAGAGGACAGAGGggtttaatacagtttaaaccTTAACCCTGACAGCAATATTTCTTTAAAGTTGACATGCTAATGGGGAATTATGTGCTATGTGTGTTTGGGTTGGTTTGTACATCTGTTGATATTAGGACCCCATCATTACACTTAACCCTTCCCCTCCATTTTTGCAGGCTTAACCCCTGTGTGGGAAACTGCTCCACACTTCAATACAGATGTTAGTAGAGCAAGCTACTGAAGATAACGGCCCACGCGGGGCCTGTCGACCTCCTCCTGTCCGGGGGGGGAGGCGTGCCCACCTCAGTGCCTGATCCCACCCCGACCCCCTGAGCCAAACTCCACATTCAACTCCCCTCCTGACTGCGTGCAGCCCCTCCGCACCGGCCGCGATGTCCGTCCCGCAGATGAACGGCGTGGACCCAGGAGATGAGGACCCGGACCACCTGTCCGAGACGGAGCTCGAGCTCGGGCTCGTGCACGCGCGAGACCGGCGGCGCGCCAAGTCCCTTCCAGCGTACCCGGAGCAGGCGAGCGTCCTGCTGCGCGCGCTTTCGCACGGCTGCAGCAAGCGCGTGCGTTTTGCGGACGCGCTCGGCCTGAACCTGGCGAGCGTGAAGCACTTCAGCGCCGCGGAGGAGCCGCGCGTGCCCCTGCACCTGTGCGGGCTGCCGCTCGCACCTGCGCTCGCGCCATCCGCCGCGCTCAGGGCGCACGAGGACGACGGCCAGCTGGAGGAGCGCGTACAGCGCTGCGGGCTCGCGCTCGAGAGGCTCACCGTCGGCTGCGGGCGCGTTCACGGAACCATACGCGTGTCCGCGCACGCGGGAGCGCGTGCCACGGAGGTGGGCGTGAGGTACACGCTGGACGAGTGGCAGTCGTACGTGAACGCGCGCGCGGAGCCCGTGTCCGTGCCGGCGGCTGCTGCTGCGCTCGCGCCCGATGGAAAGATGTGTACGAGGTTCTCCAGGTTCTCATTCACCGTGTGCGCGCCCCCGCGTCCCGAGTCCAACGCCGCCGTGCACTTCGCCCTGTACGtgagaggagaaggaggagaactGTGGGACAACAACGAGGGACAGAACTACACACTGAGAGCAGAGCAGCTAAACAGCGTGTGAAACACTGTGAAAAGACCCCCAGGACTAGAGGACGCTTTAAAAGGGGGCTTCTCTGCACTGCGGGTTTAGTTGGGACAGTGCTGTAAGAGACTGGAAGCTTGTGGTGAAGATCTGGACAGTTTTGGTCACACCTGAAGGAGTTTGTAATAAAAAGTACACTTATACAGTT

Function

GO:

id name namespace
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0030162 regulation of proteolysis biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0006508 proteolysis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118775 lncRNA upstream 139106 3456415 ~ 3456689 (+) True G88254
TU118774 lncRNA upstream 141420 3453975 ~ 3454375 (+) True G88253
TU118668 lncRNA upstream 178245 3386199 ~ 3417550 (+) True G88162
TU118672 lncRNA upstream 178245 3403396 ~ 3417550 (+) False G88162
XR_002650421.1 lncRNA upstream 353369 3240721 ~ 3242426 (+) True LOC111193314
TU118816 lncRNA downstream 244502 3841883 ~ 3842217 (+) True G88291
TU118817 lncRNA downstream 252702 3850083 ~ 3851188 (+) True G88292
TU118819 lncRNA downstream 303645 3901026 ~ 3901611 (+) True G88294
TU118824 lncRNA downstream 378348 3975729 ~ 4023551 (+) True G88298
TU118831 lncRNA downstream 403046 4000427 ~ 4001895 (+) True G88305
XM_007238630.3 mRNA upstream 11592 3572497 ~ 3584203 (+) True LOC103035299
XM_007238628.3 mRNA upstream 90540 3465675 ~ 3505255 (+) True fam69c
XM_022673395.1 mRNA upstream 142159 3443319 ~ 3453636 (+) True LOC103034970
XM_007238627.3 mRNA upstream 156878 3429467 ~ 3438917 (+) True cidea
XM_022673390.1 mRNA upstream 377108 3149654 ~ 3218687 (+) False sugct
XM_022673398.1 mRNA downstream 159026 3756407 ~ 3949879 (+) True fars2
XM_007238635.3 mRNA downstream 454351 4051732 ~ 4058573 (+) True ly86
XM_015602815.2 mRNA downstream 479545 4076926 ~ 4155395 (+) True rreb1
XM_007238645.3 mRNA downstream 1158477 4755858 ~ 4771689 (+) False LOC103038427
XM_007238642.3 mRNA downstream 1158478 4755859 ~ 4777076 (+) True LOC103038427
TU119049 other downstream 1082732 4680113 ~ 4680837 (+) True G88473
TU119068 other downstream 1199441 4796822 ~ 4806673 (+) True G88486
TU119113 other downstream 1314275 4911656 ~ 5123726 (+) False pard3
trnap-agg_3 other downstream 3645525 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 3981229 7578610 ~ 7579960 (+) True G88849

Expression Profile