RNA id: XR_002650421.1


Basic Information

Item Value
RNA id XR_002650421.1
length 1522
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id LOC111193314
representative True

Chromosome Information

Item Value
chromosome id NC_035906.1
NCBI id CM008309.1
chromosome length 35377769
location 3240721 ~ 3242426 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacacactttcattgtgtttctgtccccagcactttgtgtagaGTAGCAAAGTACAAATTAATTATTGGTTGactaatttttgttttagtcgACATTGTCGATTTATGTTTACTGATTTAGTGCAGCCCTCAAAAAATCTGAAACCATAAACAAGATTAGGTTGTGGATTGGTTGATACAGTCTTGATGAAATTTGATGGAATTTGCGACCATTACGATTTTTGCTTTCCGACAGCATTAGCCTTGCTGCTCCCgttctgaaaaaaaagcattctGTGTCCAAACATGCCTGGCTTACTGCATAAATTTTAACTAAGATAGGGAAAATAACACTTCTGGGtgaacattcattttttttttttagttttttttttttttagttttttttttttttacaggagaaCGCTGATGTGAAATTGACTTAGGGTGTGGTGAATCATGTTAACTAGTAAAAATCTCTGACAAGTACCCCACCTCTTTTTGCCCCAGCATTCTAATACACAGCTGTTATTTGATCTATAAAATTAACAAGGTTCAAATTAAATCcgcacttcattggtagaatttagAGGTACTTGACATTTAAAAGAGGCActtgagaactttgaaagtgcacaggtagtttattttaaaaaaagtgtttatacaGACAGTACTTTGAGGTAGTTATTATCTGGGGTGCTGCCATCTTGAGGTTAACTCCCAAATCCAGTTGCGCTCTCTATTCACTCTGCCAATCCACTCTAGCTCTGTTATGCATGTTGGAATTTCTTCTATGTCAAGAGAATGTAGAACGGAATGGGATTGGGAGTTAATCTCAAAATGGCCGTATGCAGAGAACTGCTTCAAGGAACTgtctatttaaaaagtatttttgaagtaaatgttttaaaattgcaAATGTGCTCTCAGTGCTCGTTTTACATATCAGGGCCATCAGAATTCTACCATTGAAGTGTGCCGCTACTAGCCTTGTTATTCGTGGAAACATAGAAAGCTGGGGTGAACAGAGGTGAGTCAGAGATCCCTACAGGTTATCATGTTTATACTACACTCCAAGTACATTTCACACCGTCATTCTCCTTTAAAGATGCAGGAGGAAAAAGGCCAAATATGAAATGTTTACCAGTTATTCAGTTCTTATTTTATGAGTTTCTATAATATTTcagatggaaaaaaaattttGCGTAGTGGAGTTCCAGGACAAGGGTACTGCTGTCGTCCCAAGCTGCTGGCTCAAGGGTGACAAATGTTCGTGGCCACCCTATAATTGTCAAAAGCTGCAAAAATCTGTCCAACAGATGGAGCAATCCAGACAAGACTGGACTGTTTATGACAATGTGCGGTGTCTTGTAACATGTGATACCTATGAAGTGGCTCACAGCCGCCTTAAATTAGTTGAAGAAGGATGCTGCACATCTGAATTGCAGTCAGAGGAGGAGACAGAAgaaccaaaaaaaaggaaaatgaggACTAATACTCGTTACAGTGAGTATGTTGATGAGGACCCTAGAGAGTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU118661 lncRNA upstream 307637 2932550 ~ 2933084 (+) True G88159
TU118584 lncRNA upstream 741422 2498793 ~ 2499299 (+) True G88092
TU118580 lncRNA upstream 764185 2475926 ~ 2476536 (+) True G88089
TU118571 lncRNA upstream 766926 2467097 ~ 2473795 (+) True G88086
TU118538 lncRNA upstream 926992 2306508 ~ 2313729 (+) True G88064
TU118668 lncRNA downstream 143773 3386199 ~ 3417550 (+) True G88162
TU118672 lncRNA downstream 160970 3403396 ~ 3417550 (+) False G88162
TU118774 lncRNA downstream 211549 3453975 ~ 3454375 (+) True G88253
TU118775 lncRNA downstream 213989 3456415 ~ 3456689 (+) True G88254
TU118816 lncRNA downstream 599457 3841883 ~ 3842217 (+) True G88291
XM_022673389.1 mRNA upstream 22034 3149654 ~ 3218687 (+) True sugct
XM_022673390.1 mRNA upstream 22034 3149654 ~ 3218687 (+) False sugct
XM_022673391.1 mRNA upstream 22034 3149654 ~ 3218687 (+) False sugct
XM_007238623.3 mRNA upstream 379068 2858385 ~ 2861653 (+) True gjd4
XM_007238621.3 mRNA upstream 392613 2755412 ~ 2848108 (+) True ccny
XM_007238627.3 mRNA downstream 187041 3429467 ~ 3438917 (+) True cidea
XM_022673395.1 mRNA downstream 200893 3443319 ~ 3453636 (+) True LOC103034970
XM_007238628.3 mRNA downstream 223249 3465675 ~ 3505255 (+) True fam69c
XM_007238630.3 mRNA downstream 330071 3572497 ~ 3584203 (+) True LOC103035299
XM_015602809.2 mRNA downstream 353369 3595795 ~ 3597381 (+) True ppp1r3g
TU119049 other downstream 1437687 4680113 ~ 4680837 (+) True G88473
TU119068 other downstream 1554396 4796822 ~ 4806673 (+) True G88486
TU119113 other downstream 1669230 4911656 ~ 5123726 (+) False pard3
trnap-agg_3 other downstream 4000480 7242906 ~ 7242977 (+) True trnap-agg_3
TU119517 other downstream 4336184 7578610 ~ 7579960 (+) True G88849

Expression Profile